Bromine in PDB 2w36: Structures of Endonuclease V with Dna Reveal Initiation of Deaminated Adenine Repair

All present enzymatic activity of Structures of Endonuclease V with Dna Reveal Initiation of Deaminated Adenine Repair:
3.1.21.7;

The structure of Structures of Endonuclease V with Dna Reveal Initiation of Deaminated Adenine Repair, PDB code: 2w36 was solved by B.Dalhus, A.S.Arvai, I.Rosnes, O.E.Olsen, P.H.Backe, I.Alseth, H.Gao, W.Cao, J.A.Tainer, M.Bjoras, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.10
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	51.979, 132.239, 191.616, 90.00, 90.00, 90.00
R / Rfree (%)	21.7 / 25.8

The binding sites of Bromine atom in the Structures of Endonuclease V with Dna Reveal Initiation of Deaminated Adenine Repair (pdb code 2w36). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 4 binding sites of Bromine where determined in the Structures of Endonuclease V with Dna Reveal Initiation of Deaminated Adenine Repair, PDB code: 2w36:
Jump to Bromine binding site number: 1; 2; 3; 4;

Bromine binding site 1 out of 4 in the Structures of Endonuclease V with Dna Reveal Initiation of Deaminated Adenine Repair


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Structures of Endonuclease V with Dna Reveal Initiation of Deaminated Adenine Repair within 5.0Å range: probe atom residue distance (Å) B Occ C:Br3 b:99.0 occ:0.75 BR C:BRU3 0.0 99.0 0.8 C5 C:BRU3 1.9 93.7 0.8 C6 C:BRU3 2.8 92.7 0.8 C4 C:BRU3 2.9 93.4 0.8 O4 C:BRU3 3.2 93.2 0.8 C2' C:DC2 3.3 82.0 0.5 C6 C:DC2 3.4 80.0 0.5 C5 C:DC2 3.9 79.5 0.5 N1 C:DC2 4.0 80.6 0.5 N1 C:BRU3 4.1 90.7 0.8 N3 C:BRU3 4.1 92.3 0.8 C1' C:DC2 4.2 81.1 0.5 OP2 C:BRU3 4.3 81.8 0.8 C3' C:DC2 4.6 82.3 0.5 C2 C:BRU3 4.7 91.4 0.8 O5' C:BRU3 4.8 84.4 0.8 C4 C:DC2 4.9 80.3 0.5 C2 C:DC2 5.0 81.0 0.5

Bromine binding site 2 out of 4 in the Structures of Endonuclease V with Dna Reveal Initiation of Deaminated Adenine Repair


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Structures of Endonuclease V with Dna Reveal Initiation of Deaminated Adenine Repair within 5.0Å range: probe atom residue distance (Å) B Occ C:Br9 b:70.3 occ:1.00 BR C:BRU9 0.0 70.3 1.0 C5 C:BRU9 1.9 55.7 1.0 C6 C:BRU9 2.8 53.5 1.0 C4 C:BRU9 2.9 54.0 1.0 O4 C:BRU9 3.2 52.6 1.0 C8 C:DA8 3.5 47.0 1.0 N7 C:DA8 3.5 44.2 1.0 N2 C:DG11 3.7 76.4 1.0 N9 C:DA8 3.8 46.0 1.0 C5 C:DA8 3.8 40.9 1.0 O C:HOH2010 3.8 45.7 1.0 O C:HOH2013 3.9 54.8 1.0 C2' C:DA8 4.0 44.6 1.0 O C:HOH2011 4.0 60.1 1.0 C4 C:DA8 4.0 43.1 1.0 N1 C:BRU9 4.1 51.5 1.0 N3 C:BRU9 4.1 49.7 1.0 N4 C:DC10 4.2 49.6 1.0 C1' C:DA8 4.4 45.4 1.0 C6 C:DA8 4.5 41.7 1.0 C2 C:BRU9 4.7 50.9 1.0 N3 C:DA8 4.8 42.0 1.0 C2 C:DG11 4.9 78.3 1.0 C4 C:DC10 4.9 51.5 1.0 N6 C:DA8 4.9 42.4 1.0

Bromine binding site 3 out of 4 in the Structures of Endonuclease V with Dna Reveal Initiation of Deaminated Adenine Repair


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Structures of Endonuclease V with Dna Reveal Initiation of Deaminated Adenine Repair within 5.0Å range: probe atom residue distance (Å) B Occ E:Br3 b:99.0 occ:0.75 BR E:BRU3 0.0 99.0 0.8 C5 E:BRU3 1.9 95.2 0.8 C6 E:BRU3 2.8 94.5 0.8 C4 E:BRU3 2.9 95.0 0.8 N1 E:DC2 3.1 86.3 0.5 O4 E:BRU3 3.2 94.5 0.8 C6 E:DC2 3.3 85.5 0.5 C2 E:DC2 3.4 85.5 0.5 C2' E:DC2 3.5 88.5 0.5 C1' E:DC2 3.6 87.4 0.5 C5 E:DC2 3.6 85.1 0.5 N3 E:DC2 3.7 85.3 0.5 C4 E:DC2 3.8 85.1 0.5 O2 E:DC2 4.0 84.9 0.5 N1 E:BRU3 4.1 93.1 0.8 N3 E:BRU3 4.1 94.2 0.8 OP2 E:BRU3 4.3 89.7 0.8 O E:HOH2002 4.6 65.8 1.0 C2 E:BRU3 4.7 93.6 0.8 O E:HOH2003 4.7 74.6 1.0 N4 E:DC2 4.7 84.4 0.5 N7 E:DA4 4.9 79.5 1.0 C3' E:DC2 4.9 88.8 0.5 O4' E:DC2 5.0 88.0 0.5

Bromine binding site 4 out of 4 in the Structures of Endonuclease V with Dna Reveal Initiation of Deaminated Adenine Repair


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Structures of Endonuclease V with Dna Reveal Initiation of Deaminated Adenine Repair within 5.0Å range: probe atom residue distance (Å) B Occ E:Br9 b:64.3 occ:1.00 BR E:BRU9 0.0 64.3 1.0 C5 E:BRU9 1.9 50.0 1.0 C6 E:BRU9 2.8 48.5 1.0 C4 E:BRU9 2.9 47.9 1.0 O4 E:BRU9 3.2 43.2 1.0 N2 E:DG11 3.5 68.1 1.0 C8 E:DA8 3.8 46.2 1.0 N7 E:DA8 3.9 41.8 1.0 C2' E:DA8 3.9 46.3 1.0 N9 E:DA8 4.0 47.9 1.0 N1 E:BRU9 4.1 48.8 1.0 C5 E:DA8 4.1 43.5 1.0 N3 E:BRU9 4.2 45.2 1.0 N4 E:DC10 4.2 46.1 1.0 C4 E:DA8 4.2 45.6 1.0 O E:HOH2009 4.4 46.8 1.0 C1' E:DA8 4.5 48.7 1.0 C2 E:DG11 4.7 72.6 1.0 C2 E:BRU9 4.7 47.1 1.0 C6 E:DA8 4.9 45.0 1.0 O E:HOH2007 4.9 49.5 1.0 C4 E:DC10 4.9 47.7 1.0 N3 E:DA8 5.0 45.3 1.0

B.Dalhus, A.S.Arvai, I.Rosnes, O.E.Olsen, P.H.Backe, I.Alseth, H.Gao, W.Cao, J.A.Tainer, M.Bjoras. Structures of Endonuclease V with Dna Reveal Initiation of Deaminated Adenine Repair. Nat.Struct.Mol.Biol. V. 16 138 2009.
ISSN: ISSN 1545-9993
PubMed: 19136958
DOI: 10.1038/NSMB.1538