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Bromine in PDB 2xth: K2PTBR6 Binding to Lysozyme

Enzymatic activity of K2PTBR6 Binding to Lysozyme

All present enzymatic activity of K2PTBR6 Binding to Lysozyme:
3.2.1.17;

Protein crystallography data

The structure of K2PTBR6 Binding to Lysozyme, PDB code: 2xth was solved by J.R.Helliwell, A.M.T.Bell, P.Bryant, S.Fisher, J.Habash, M.Helliwell, I.Margiolaki, S.Kaenket, Y.Watier, J.Wright, S.K.Yalamanchili, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.64 / 1.80
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.640, 78.640, 36.450, 90.00, 90.00, 90.00
R / Rfree (%) 19.8 / 24.9

Other elements in 2xth:

The structure of K2PTBR6 Binding to Lysozyme also contains other interesting chemical elements:

Platinum (Pt) 2 atoms

Bromine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Bromine atom in the K2PTBR6 Binding to Lysozyme (pdb code 2xth). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 11 binding sites of Bromine where determined in the K2PTBR6 Binding to Lysozyme, PDB code: 2xth:
Jump to Bromine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Bromine binding site 1 out of 11 in 2xth

Go back to Bromine Binding Sites List in 2xth
Bromine binding site 1 out of 11 in the K2PTBR6 Binding to Lysozyme


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of K2PTBR6 Binding to Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1130

b:21.9
occ:0.50
 BR1 A:6BP1130 0.0 21.9 0.5
PT A:6BP1130 2.4 17.5 0.5
BR4 A:6BP1130 3.4 24.8 0.5
BR3 A:6BP1130 3.5 18.2 0.5
BR5 A:6BP1130 3.7 22.1 0.5
CB A:ALA10 3.9 13.4 1.0
O A:ALA10 4.2 12.0 1.0
C A:ALA10 4.2 12.7 1.0
N A:ALA11 4.3 13.4 1.0
CA A:ALA11 4.6 13.1 1.0
CD A:ARG14 4.7 19.5 1.0
CB A:ARG14 4.7 16.3 1.0
CA A:ALA10 4.7 12.4 1.0
BR2 A:6BP1130 4.9 35.7 0.5
O A:HOH2010 4.9 45.9 1.0

Bromine binding site 2 out of 11 in 2xth

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Bromine binding site 2 out of 11 in the K2PTBR6 Binding to Lysozyme


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of K2PTBR6 Binding to Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1130

b:35.7
occ:0.50
 BR2 A:6BP1130 0.0 35.7 0.5
PT A:6BP1130 2.5 17.5 0.5
BR3 A:6BP1130 3.5 18.2 0.5
BR4 A:6BP1130 3.6 24.8 0.5
BR5 A:6BP1130 3.7 22.1 0.5
O A:HOH2086 4.3 24.4 1.0
NZ A:LYS1 4.6 22.4 1.0
BR1 A:6BP1130 4.9 21.9 0.5

Bromine binding site 3 out of 11 in 2xth

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Bromine binding site 3 out of 11 in the K2PTBR6 Binding to Lysozyme


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of K2PTBR6 Binding to Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1130

b:18.2
occ:0.50
 BR3 A:6BP1130 0.0 18.2 0.5
PT A:6BP1130 2.5 17.5 0.5
BR5 A:6BP1130 3.5 22.1 0.5
BR1 A:6BP1130 3.5 21.9 0.5
BR2 A:6BP1130 3.5 35.7 0.5
NH1 A:ARG14 4.0 30.1 1.0
CD A:ARG14 4.1 19.5 1.0
CZ A:ARG14 4.6 27.6 1.0
NE A:ARG14 4.7 24.8 1.0
BR4 A:6BP1130 5.0 24.8 0.5

Bromine binding site 4 out of 11 in 2xth

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Bromine binding site 4 out of 11 in the K2PTBR6 Binding to Lysozyme


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of K2PTBR6 Binding to Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1130

b:24.8
occ:0.50
 BR4 A:6BP1130 0.0 24.8 0.5
PT A:6BP1130 2.5 17.5 0.5
O A:GLU7 3.3 11.1 1.0
BR1 A:6BP1130 3.4 21.9 0.5
BR2 A:6BP1130 3.6 35.7 0.5
CG A:GLU7 3.6 12.6 1.0
BR5 A:6BP1130 3.9 22.1 0.5
N A:ALA11 4.0 13.4 1.0
CB A:ALA11 4.0 13.8 1.0
C A:GLU7 4.2 11.4 1.0
CA A:ALA11 4.3 13.1 1.0
CB A:ALA10 4.3 13.4 1.0
CA A:GLU7 4.4 12.5 1.0
CB A:GLU7 4.6 11.6 1.0
OE2 A:GLU7 4.7 18.0 1.0
CD A:GLU7 4.7 13.4 1.0
CE2 A:PHE3 4.7 14.7 1.0
C A:ALA10 4.7 12.7 1.0
BR3 A:6BP1130 5.0 18.2 0.5

Bromine binding site 5 out of 11 in 2xth

Go back to Bromine Binding Sites List in 2xth
Bromine binding site 5 out of 11 in the K2PTBR6 Binding to Lysozyme


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 5 of K2PTBR6 Binding to Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1130

b:22.1
occ:0.50
 BR5 A:6BP1130 0.0 22.1 0.5
PT A:6BP1130 2.7 17.5 0.5
NH1 A:ARG14 3.1 30.1 1.0
BR3 A:6BP1130 3.5 18.2 0.5
CD A:ARG14 3.5 19.5 1.0
CA A:ALA11 3.7 13.1 1.0
CB A:ALA11 3.7 13.8 1.0
BR2 A:6BP1130 3.7 35.7 0.5
BR1 A:6BP1130 3.7 21.9 0.5
O A:HOH2089 3.8 19.7 1.0
BR4 A:6BP1130 3.9 24.8 0.5
CZ A:ARG14 4.1 27.6 1.0
NE A:ARG14 4.2 24.8 1.0
CE1 A:HIS15 4.2 21.2 1.0
CB A:ARG14 4.5 16.3 1.0
N A:ALA11 4.5 13.4 1.0
ND1 A:HIS15 4.6 20.9 1.0
O A:ALA11 4.6 12.2 1.0
CG A:ARG14 4.6 18.0 1.0
C A:ALA11 4.6 12.8 1.0

Bromine binding site 6 out of 11 in 2xth

Go back to Bromine Binding Sites List in 2xth
Bromine binding site 6 out of 11 in the K2PTBR6 Binding to Lysozyme


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 6 of K2PTBR6 Binding to Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1131

b:20.3
occ:0.50
 BR1 A:6BP1131 0.0 20.3 0.5
PT A:6BP1131 2.5 16.1 0.5
BR6 A:6BP1131 3.3 20.4 0.5
BR4 A:6BP1131 3.4 21.6 0.5
BR3 A:6BP1131 3.4 22.0 0.5
BR5 A:6BP1131 3.6 19.3 0.5
BR2 A:6BP1131 4.8 16.7 0.5

Bromine binding site 7 out of 11 in 2xth

Go back to Bromine Binding Sites List in 2xth
Bromine binding site 7 out of 11 in the K2PTBR6 Binding to Lysozyme


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 7 of K2PTBR6 Binding to Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1131

b:16.7
occ:0.50
 BR2 A:6BP1131 0.0 16.7 0.5
PT A:6BP1131 2.4 16.1 0.5
BR4 A:6BP1131 3.2 21.6 0.5
BR5 A:6BP1131 3.4 19.3 0.5
BR3 A:6BP1131 3.4 22.0 0.5
O A:HOH2078 3.5 28.4 1.0
BR6 A:6BP1131 3.5 20.4 0.5
ND2 A:ASN65 3.7 19.3 1.0
N A:PRO79 3.8 13.5 1.0
CB A:PRO79 3.8 12.3 1.0
CA A:PRO79 3.8 12.8 1.0
CD A:PRO79 4.0 13.7 1.0
CB A:ASN65 4.2 13.4 1.0
C A:ILE78 4.3 13.7 1.0
CG A:PRO79 4.3 13.4 1.0
CG A:ASN65 4.5 16.2 1.0
O A:ILE78 4.6 12.9 1.0
ND2 A:ASN74 4.6 18.8 1.0
BR1 A:6BP1131 4.8 20.3 0.5
O A:ASN65 4.8 12.3 1.0
O A:HOH2076 5.0 35.6 1.0

Bromine binding site 8 out of 11 in 2xth

Go back to Bromine Binding Sites List in 2xth
Bromine binding site 8 out of 11 in the K2PTBR6 Binding to Lysozyme


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 8 of K2PTBR6 Binding to Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1131

b:22.0
occ:0.50
 BR3 A:6BP1131 0.0 22.0 0.5
PT A:6BP1131 2.4 16.1 0.5
BR5 A:6BP1131 3.3 19.3 0.5
BR1 A:6BP1131 3.4 20.3 0.5
BR2 A:6BP1131 3.4 16.7 0.5
BR6 A:6BP1131 3.5 20.4 0.5
BR4 A:6BP1131 4.7 21.6 0.5
O A:HOH2078 4.8 28.4 1.0

Bromine binding site 9 out of 11 in 2xth

Go back to Bromine Binding Sites List in 2xth
Bromine binding site 9 out of 11 in the K2PTBR6 Binding to Lysozyme


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 9 of K2PTBR6 Binding to Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1131

b:21.6
occ:0.50
 BR4 A:6BP1131 0.0 21.6 0.5
PT A:6BP1131 2.3 16.1 0.5
BR2 A:6BP1131 3.2 16.7 0.5
BR6 A:6BP1131 3.4 20.4 0.5
BR1 A:6BP1131 3.4 20.3 0.5
BR5 A:6BP1131 3.4 19.3 0.5
O A:HOH2066 3.5 13.4 1.0
ND2 A:ASN65 3.7 19.3 1.0
CB A:PRO79 4.1 12.3 1.0
BR3 A:6BP1131 4.7 22.0 0.5
O A:ASN65 4.7 12.3 1.0
CG A:ASN65 4.8 16.2 1.0
CA A:PRO79 4.8 12.8 1.0

Bromine binding site 10 out of 11 in 2xth

Go back to Bromine Binding Sites List in 2xth
Bromine binding site 10 out of 11 in the K2PTBR6 Binding to Lysozyme


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 10 of K2PTBR6 Binding to Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1131

b:19.3
occ:0.50
 BR5 A:6BP1131 0.0 19.3 0.5
PT A:6BP1131 2.7 16.1 0.5
BR3 A:6BP1131 3.3 22.0 0.5
BR2 A:6BP1131 3.4 16.7 0.5
BR4 A:6BP1131 3.4 21.6 0.5
BR1 A:6BP1131 3.6 20.3 0.5
CG A:PRO79 3.7 13.4 1.0
CB A:PRO79 3.8 12.3 1.0
CD A:PRO79 4.2 13.7 1.0
BR6 A:6BP1131 4.9 20.4 0.5
CA A:PRO79 4.9 12.8 1.0
N A:PRO79 5.0 13.5 1.0

Reference:

J.R.Helliwell, A.M.T.Bell, P.Bryant, S.Fisher, J.Habash, M.Helliwell, I.Margiolaki, S.Kaenket, Y.Watier, J.Wright, S.K.Yalamanchili. Time-Dependent Analysis of K2PTBR6 Binding to Lysozyme Studied By Protein Powder and Single Crystal X-Ray Analysis Z.Kristallogr. V. 225 570 2010.
ISSN: ISSN 0044-2968
DOI: 10.1524/ZKRI.2010.1349
Page generated: Wed Jul 10 19:02:21 2024

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