Atomistry » Bromine » PDB 2xpn-3bnq » 318d
Atomistry »
  Bromine »
    PDB 2xpn-3bnq »
      318d »

Bromine in PDB 318d: Crystal Structures of D(Ccgggcc(Br)5CGG)-Hexagonal Form

Protein crystallography data

The structure of Crystal Structures of D(Ccgggcc(Br)5CGG)-Hexagonal Form, PDB code: 318d was solved by D.B.Tippin, M.Sundaralingam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.00
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 55.680, 55.680, 46.240, 90.00, 90.00, 120.00
R / Rfree (%) 16.2 / 18

Bromine Binding Sites:

The binding sites of Bromine atom in the Crystal Structures of D(Ccgggcc(Br)5CGG)-Hexagonal Form (pdb code 318d). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Crystal Structures of D(Ccgggcc(Br)5CGG)-Hexagonal Form, PDB code: 318d:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in 318d

Go back to Bromine Binding Sites List in 318d
Bromine binding site 1 out of 2 in the Crystal Structures of D(Ccgggcc(Br)5CGG)-Hexagonal Form


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structures of D(Ccgggcc(Br)5CGG)-Hexagonal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br8

b:36.1
occ:1.00
BR A:CBR8 0.0 36.1 1.0
C5 A:CBR8 1.9 28.8 1.0
C6 A:CBR8 2.7 31.2 1.0
C4 A:CBR8 2.9 31.7 1.0
N4 A:CBR8 3.1 31.8 1.0
N1 A:DC7 3.6 26.4 1.0
C6 A:DC7 3.7 24.8 1.0
C2 A:DC7 3.7 27.0 1.0
N3 A:DC7 3.8 24.0 1.0
C5 A:DC7 3.8 19.2 1.0
C4 A:DC7 3.8 22.1 1.0
O A:HOH26 3.9 35.9 1.0
OP2 A:CBR8 4.0 35.1 1.0
C2' A:DC7 4.0 30.4 1.0
C3' A:DC7 4.0 31.7 1.0
N1 A:CBR8 4.0 34.4 1.0
O A:HOH106 4.1 65.2 1.0
N3 A:CBR8 4.1 31.6 1.0
O2 A:DC7 4.3 27.7 1.0
O A:HOH105 4.3 73.9 1.0
N7 A:DG9 4.3 37.8 1.0
C1' A:DC7 4.4 30.3 1.0
O5' A:CBR8 4.4 35.4 1.0
O A:HOH84 4.5 62.6 1.0
N4 A:DC7 4.6 20.5 1.0
C2 A:CBR8 4.6 35.8 1.0
P A:CBR8 4.7 37.0 1.0
O A:HOH27 4.7 49.2 1.0
C8 A:DG9 4.8 37.0 1.0
O3' A:DC7 4.8 35.8 1.0

Bromine binding site 2 out of 2 in 318d

Go back to Bromine Binding Sites List in 318d
Bromine binding site 2 out of 2 in the Crystal Structures of D(Ccgggcc(Br)5CGG)-Hexagonal Form


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structures of D(Ccgggcc(Br)5CGG)-Hexagonal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br18

b:44.7
occ:1.00
BR B:CBR18 0.0 44.7 1.0
C5 B:CBR18 1.8 24.0 1.0
C6 B:CBR18 2.7 29.8 1.0
C4 B:CBR18 2.8 27.6 1.0
N4 B:CBR18 3.0 29.3 1.0
O B:HOH49 3.0 54.1 1.0
C5 B:DC17 3.7 15.7 1.0
C6 B:DC17 3.8 24.8 1.0
C4 B:DC17 3.8 24.8 1.0
OP2 B:CBR18 3.9 39.5 1.0
O B:HOH21 3.9 49.8 1.0
N1 B:CBR18 4.0 28.8 1.0
N1 B:DC17 4.0 23.4 1.0
N3 B:CBR18 4.0 26.3 1.0
N3 B:DC17 4.1 28.1 1.0
O B:HOH43 4.2 55.6 1.0
C2 B:DC17 4.2 24.5 1.0
C3' B:DC17 4.3 37.6 1.0
N4 B:DC17 4.4 27.0 1.0
O5' B:CBR18 4.4 39.8 1.0
C2 B:CBR18 4.5 30.4 1.0
C2' B:DC17 4.6 32.8 1.0
P B:CBR18 4.8 38.1 1.0
C1' B:DC17 4.8 29.2 1.0

Reference:

D.B.Tippin, M.Sundaralingam. Nine Polymorphic Crystal Structures of D(Ccgggcccgg), D(CCGGGCCM5CGG), D(CM5CGGGCCM5CGG) and D(Ccgggcc(Br)5CGG) in Three Different Conformations: Effects of Spermine Binding and Methylation on the Bending and Condensation of A-Dna. J.Mol.Biol. V. 267 1171 1997.
ISSN: ISSN 0022-2836
PubMed: 9150405
DOI: 10.1006/JMBI.1997.0945
Page generated: Mon Jul 7 05:00:26 2025

Last articles

Br in 6BNA
Br in 6B8Z
Br in 6BGB
Br in 6ARZ
Br in 6BJO
Br in 6B79
Br in 6ADC
Br in 6AR4
Br in 6ADB
Br in 6ARK
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy