Chemical elements
  Bromine
    Isotopes
    Energy
    Production
    Application
    PDB 101d-1f5m
    PDB 1f6j-1kdh
    PDB 1kfo-1o3l
    PDB 1o5m-1to3
    PDB 1uhj-1zpz
    PDB 1zw9-2fkk
    PDB 2fpr-2j9m
    PDB 2ja5-2qfe
    PDB 2qgd-2wb9
    PDB 2wbb-3biy
      2wbb
      2wbd
      2wbk
      2wdu
      2wh6
      2who
      2whr
      2wmw
      2wna
      2wp5
      2wpf
      2wq1
      2wq4
      2x3h
      2x40
      2x41
      2x42
      2x6d
      2x6e
      2xaf
      2xag
      2xmd
      2xpn
      2xq3
      2xth
      2ykf
      2zc1
      2zdu
      2ze1
      2zjl
      2zm3
      2zmm
      2zn7
      318d
      319d
      344d
      358d
      365d
      366d
      367d
      376d
      380d
      381d
      3a0b
      3a3k
      3a8b
      3aaq
      3ax4
      3bbz
      3biy
    PDB 3bm9-3eki
    PDB 3en9-3hvo
    PDB 3hzw-3lbz
    PDB 3ld5-3ot3
    PDB 3oyp-4de3
    PDB 4dey-9est

Bromine in the structure of Crystal Structures of D(Ccggg(Br)5CCCGG)-Orthogonal Form (pdb 319d)






The binding sites of Bromine atom in the structure of Crystal Structures of D(Ccggg(Br)5CCCGG)-Orthogonal Form (pdb code 319d). This binding sites where shown with 5.0 Angstroms radius around Bromine atom.
The 319d structure was solved by D.B.TIPPIN, M.SUNDARALINGAM, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)8.0-2.2
Space groupP212121
a (A)24.360
b (A)44.290
c (A)48.050
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)15
Rfree (%)17.2


Bromine Binding Sites:

Bromine binding site 1 out of 2 in 319d


Bromine binding site 1 out of 2 in 319d
Click to enlarge
stereopicture of Bromine binding site 1 out of 2 in 319d
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Bromine in the PDB 319d. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Bromine atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Dg5, A: Cbr6, A: Dc7, A: Hoh32, A: Hoh34, A: Hoh58, A: Hoh100, A: Hoh111,

conact list:


AtomAtomDistance (A)
BrN9 A:Dg53.87
BrN3 A:Dg54.57
BrC3' A:Dg54.04
BrC8 A:Dg53.75
BrC6 A:Dg54.46
BrN1 A:Dg55.00
BrC5 A:Dg53.78
BrC1' A:Dg54.66
BrN7 A:Dg53.73
BrO3' A:Dg54.83
BrC4 A:Dg53.86
BrC2' A:Dg54.36
BrN3 A:Cbr64.14
BrC2 A:Cbr64.66
BrC6 A:Cbr62.79
BrN1 A:Cbr64.09
BrC5 A:Cbr61.87
BrP A:Cbr64.61
BrC4 A:Cbr62.90
BrOP2 A:Cbr63.86
BrBR A:Cbr60.00
BrO5' A:Cbr64.31
BrN4 A:Cbr63.09
BrC6 A:Dc74.74
BrC5 A:Dc73.98
BrC4 A:Dc74.52
BrN4 A:Dc74.46
BrO A:Hoh323.99
BrO A:Hoh343.63
BrO A:Hoh584.04
BrO A:Hoh1004.58
BrO A:Hoh1114.12

interactive model:


Bromine binding site 2 out of 2 in 319d


Bromine binding site 2 out of 2 in 319d
Click to enlarge
stereopicture of Bromine binding site 2 out of 2 in 319d
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Bromine in the PDB 319d. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Bromine atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Dg15, B: Cbr16, B: Hoh33, B: Hoh36, B: Hoh41, B: Hoh54, B: Hoh91, B: Hoh92, B: Hoh110,

conact list:


AtomAtomDistance (A)
BrN9 B:Dg154.24
BrC3' B:Dg154.40
BrC8 B:Dg153.71
BrC6 B:Dg154.88
BrC5 B:Dg154.17
BrN7 B:Dg153.67
BrC4 B:Dg154.49
BrOP2 B:Dg154.66
BrC2' B:Dg154.93
BrO5' B:Dg154.52
BrN3 B:Cbr164.15
BrC2 B:Cbr164.62
BrC6 B:Cbr162.74
BrN1 B:Cbr164.04
BrC5 B:Cbr161.86
BrP B:Cbr164.61
BrC4 B:Cbr162.91
BrOP2 B:Cbr163.69
BrBR B:Cbr160.00
BrO5' B:Cbr164.36
BrN4 B:Cbr163.15
BrO B:Hoh333.75
BrO B:Hoh363.94
BrO B:Hoh414.23
BrO B:Hoh543.65
BrO B:Hoh913.66
BrO B:Hoh923.73
BrO B:Hoh1104.39

interactive model:




© Copyright 2008-2012 by atomistry.com