Bromine in PDB 358d: Crystal Structure of the 2:1 Netropsin-Dna Decamer D(Cbrcccciiiii) Complex with End-to-End Binding

The structure of Crystal Structure of the 2:1 Netropsin-Dna Decamer D(Cbrcccciiiii) Complex with End-to-End Binding, PDB code: 358d was solved by S.N.Mitra, X.Chen, M.Sundaralingam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	8.00 / 2.50
Space group	P 61
Cell size a, b, c (Å), α, β, γ (°)	32.130, 32.130, 143.920, 90.00, 90.00, 120.00
R / Rfree (%)	21.1 / 29.8

The binding sites of Bromine atom in the Crystal Structure of the 2:1 Netropsin-Dna Decamer D(Cbrcccciiiii) Complex with End-to-End Binding (pdb code 358d). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Crystal Structure of the 2:1 Netropsin-Dna Decamer D(Cbrcccciiiii) Complex with End-to-End Binding, PDB code: 358d:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in the Crystal Structure of the 2:1 Netropsin-Dna Decamer D(Cbrcccciiiii) Complex with End-to-End Binding


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of the 2:1 Netropsin-Dna Decamer D(Cbrcccciiiii) Complex with End-to-End Binding within 5.0Å range: probe atom residue distance (Å) B Occ A:Br2 b:46.8 occ:1.00 BR A:CBR2 0.0 46.8 1.0 C5 A:CBR2 1.9 30.5 1.0 C6 A:CBR2 2.8 27.2 1.0 C4 A:CBR2 2.9 28.5 1.0 N4 A:CBR2 3.1 26.9 1.0 C5 A:DC1 3.5 11.1 1.0 O A:HOH25 3.5 44.2 1.0 O A:HOH40 3.6 11.2 1.0 C6 A:DC1 3.7 9.4 1.0 N1 A:CBR2 4.1 24.9 1.0 N3 A:CBR2 4.1 23.9 1.0 C4 A:DC1 4.3 11.8 1.0 N4 A:DC3 4.4 18.0 1.0 N1 A:DC1 4.5 7.0 1.0 O A:HOH37 4.6 35.1 1.0 C2 A:CBR2 4.6 26.6 1.0 N4 A:DC1 4.8 9.2 1.0 C2' A:DC1 4.9 11.6 1.0 N3 A:DC1 5.0 11.8 1.0

Bromine binding site 2 out of 2 in the Crystal Structure of the 2:1 Netropsin-Dna Decamer D(Cbrcccciiiii) Complex with End-to-End Binding


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of the 2:1 Netropsin-Dna Decamer D(Cbrcccciiiii) Complex with End-to-End Binding within 5.0Å range: probe atom residue distance (Å) B Occ B:Br12 b:38.1 occ:1.00 BR B:CBR12 0.0 38.1 1.0 C5 B:CBR12 1.9 30.9 1.0 C6 B:CBR12 2.8 25.5 1.0 C4 B:CBR12 2.9 33.2 1.0 O B:HOH31 2.9 12.4 1.0 N4 B:CBR12 3.1 34.2 1.0 C6 B:DC11 3.6 2.0 1.0 C2' B:DC11 3.7 6.9 1.0 N1 B:DC11 3.8 5.1 1.0 C5 B:DC11 3.8 5.1 1.0 O B:HOH36 3.9 46.9 1.0 N4 B:DC13 4.1 27.3 1.0 N1 B:CBR12 4.1 20.8 1.0 N3 B:CBR12 4.1 30.2 1.0 C2 B:DC11 4.3 4.9 1.0 C4 B:DC11 4.3 4.8 1.0 C1' B:DC11 4.3 8.4 1.0 O B:HOH27 4.4 6.5 1.0 N3 B:DC11 4.5 2.6 1.0 C2 B:CBR12 4.6 27.1 1.0 C4 B:DC13 4.8 22.3 1.0 OP2 B:CBR12 4.9 4.1 1.0 O2 B:DC11 5.0 7.7 1.0

X.Chen, S.N.Mitra, S.T.Rao, K.Sekar, M.Sundaralingam. A Novel End-to-End Binding of Two Netropsins to the Dna Decamers D(Ccccciiiii)2, D(CCCBR5CCIIIII)2AND D(CBR5CCCCIIIII)2. Nucleic Acids Res. V. 26 5464 1998.
ISSN: ISSN 0305-1048
PubMed: 9826773
DOI: 10.1093/NAR/26.23.5464