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Bromine in PDB 3ax4: Three-Dimensional Structure of Lectin From Dioclea Violacea and Comparative Vasorelaxant Effects with Dioclea Rostrata

Protein crystallography data

The structure of Three-Dimensional Structure of Lectin From Dioclea Violacea and Comparative Vasorelaxant Effects with Dioclea Rostrata, PDB code: 3ax4 was solved by M.J.B.Bezerra, G.A.Bezerra, J.L.Martins, K.S.Nascimento, C.S.Nagano, K.Gruber, A.M.Assereuy, P.Delatorre, B.A.M.Rocha, B.S.Cavada, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.32 / 2.61
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 61.340, 66.110, 106.690, 90.00, 90.00, 90.00
R / Rfree (%) 22.8 / 27.4

Other elements in 3ax4:

The structure of Three-Dimensional Structure of Lectin From Dioclea Violacea and Comparative Vasorelaxant Effects with Dioclea Rostrata also contains other interesting chemical elements:

Manganese (Mn) 1 atom
Calcium (Ca) 1 atom
Chlorine (Cl) 1 atom

Bromine Binding Sites:

The binding sites of Bromine atom in the Three-Dimensional Structure of Lectin From Dioclea Violacea and Comparative Vasorelaxant Effects with Dioclea Rostrata (pdb code 3ax4). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Three-Dimensional Structure of Lectin From Dioclea Violacea and Comparative Vasorelaxant Effects with Dioclea Rostrata, PDB code: 3ax4:

Bromine binding site 1 out of 1 in 3ax4

Go back to Bromine Binding Sites List in 3ax4
Bromine binding site 1 out of 1 in the Three-Dimensional Structure of Lectin From Dioclea Violacea and Comparative Vasorelaxant Effects with Dioclea Rostrata


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Three-Dimensional Structure of Lectin From Dioclea Violacea and Comparative Vasorelaxant Effects with Dioclea Rostrata within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br242

b:64.9
occ:1.00
BR A:XMM242 0.0 64.9 1.0
C13 A:XMM242 1.9 29.4 1.0
C10 A:XMM242 2.9 31.0 1.0
C14 A:XMM242 3.0 24.9 1.0
CL A:XMM242 3.2 45.8 1.0
C8 A:XMM242 4.3 31.7 1.0
C12 A:XMM242 4.4 23.6 1.0
HD13 A:LEU99 4.5 32.7 1.0
C9 A:XMM242 4.9 31.7 1.0

Reference:

M.J.B.Bezerra, N.V.F.C.Rodrigues, A.F.Pires, G.A.Bezerra, C.B.Nobre, K.L.L.Alencar, P.M.G.Soares, K.S.Nascimento, C.S.Nagano, J.L.Martins, K.Gruber, A.H.Sampaio, P.Delatorre, B.A.M.Rocha, A.M.S.Assreuy, B.S.Cavada. Crystal Structure of Dioclea Violacea Lectin and A Comparative Study of Vasorelaxant Properties with Dioclea Rostrata Lectin Int.J.Biochem.Cell Biol. V. 45 807 2013.
ISSN: ISSN 1357-2725
PubMed: 23353644
DOI: 10.1016/J.BIOCEL.2013.01.012
Page generated: Sat Dec 12 02:10:32 2020

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