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Bromine in PDB 3biy: Crystal Structure of P300 Histone Acetyltransferase Domain in Complex with A Bisubstrate Inhibitor, Lys-Coa

Enzymatic activity of Crystal Structure of P300 Histone Acetyltransferase Domain in Complex with A Bisubstrate Inhibitor, Lys-Coa

All present enzymatic activity of Crystal Structure of P300 Histone Acetyltransferase Domain in Complex with A Bisubstrate Inhibitor, Lys-Coa:
2.3.1.48;

Protein crystallography data

The structure of Crystal Structure of P300 Histone Acetyltransferase Domain in Complex with A Bisubstrate Inhibitor, Lys-Coa, PDB code: 3biy was solved by X.Liu, L.Wang, K.Zhao, P.R.Thompson, Y.Hwang, R.Marmorstein, P.A.Cole, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.65 / 1.70
Space group P 43
Cell size a, b, c (Å), α, β, γ (°) 61.513, 61.513, 101.153, 90.00, 90.00, 90.00
R / Rfree (%) 18.2 / 21.3

Bromine Binding Sites:

The binding sites of Bromine atom in the Crystal Structure of P300 Histone Acetyltransferase Domain in Complex with A Bisubstrate Inhibitor, Lys-Coa (pdb code 3biy). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 5 binding sites of Bromine where determined in the Crystal Structure of P300 Histone Acetyltransferase Domain in Complex with A Bisubstrate Inhibitor, Lys-Coa, PDB code: 3biy:
Jump to Bromine binding site number: 1; 2; 3; 4; 5;

Bromine binding site 1 out of 5 in 3biy

Go back to Bromine Binding Sites List in 3biy
Bromine binding site 1 out of 5 in the Crystal Structure of P300 Histone Acetyltransferase Domain in Complex with A Bisubstrate Inhibitor, Lys-Coa


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of P300 Histone Acetyltransferase Domain in Complex with A Bisubstrate Inhibitor, Lys-Coa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1521

b:37.4
occ:0.81
 O A:HOH1693 2.9 23.1 1.0
O A:HOH1675 3.1 17.9 1.0
NZ A:LYS1426 3.6 20.0 1.0
CG1 A:ILE1479 3.8 17.3 1.0
O A:ARG1478 3.8 18.4 1.0
CE A:LYS1426 3.9 20.6 1.0
CD A:LYS1426 3.9 17.6 1.0
CA A:ILE1479 3.9 17.1 1.0
O A:HOH1842 4.2 30.5 1.0
CB A:ILE1479 4.3 17.2 1.0
CG A:GLU1423 4.4 19.3 1.0
C A:ARG1478 4.5 16.2 1.0
N A:ILE1479 4.6 16.1 1.0
CG2 A:ILE1479 4.6 18.1 1.0
O A:HOH1843 4.8 29.4 1.0
O A:HOH1665 4.8 17.6 1.0
O A:ILE1479 4.9 20.1 1.0
CG A:LYS1426 4.9 18.2 1.0
CD1 A:ILE1479 4.9 20.3 1.0
C A:ILE1479 5.0 18.3 1.0

Bromine binding site 2 out of 5 in 3biy

Go back to Bromine Binding Sites List in 3biy
Bromine binding site 2 out of 5 in the Crystal Structure of P300 Histone Acetyltransferase Domain in Complex with A Bisubstrate Inhibitor, Lys-Coa


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of P300 Histone Acetyltransferase Domain in Complex with A Bisubstrate Inhibitor, Lys-Coa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1522

b:37.6
occ:0.85
 O A:HOH1835 3.3 26.7 1.0
O A:HOH1706 3.4 27.7 1.0
NE2 A:GLN1661 3.6 34.9 1.0
CA A:LEU1623 3.8 21.7 1.0
N A:LEU1623 3.9 21.7 1.0
CB A:ALA1629 4.1 22.1 1.0
C A:ASP1622 4.1 23.0 1.0
CD1 A:LEU1623 4.1 21.2 1.0
CB A:LEU1623 4.3 21.3 1.0
O A:ASP1622 4.3 22.9 1.0
CB A:ASP1622 4.5 24.7 1.0
CD A:GLN1661 4.7 34.5 1.0
CG A:LEU1623 4.9 22.4 1.0
OE1 A:GLN1661 4.9 34.4 1.0
CA A:ASP1622 4.9 23.8 1.0
O A:HOH1763 5.0 28.9 1.0

Bromine binding site 3 out of 5 in 3biy

Go back to Bromine Binding Sites List in 3biy
Bromine binding site 3 out of 5 in the Crystal Structure of P300 Histone Acetyltransferase Domain in Complex with A Bisubstrate Inhibitor, Lys-Coa


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Crystal Structure of P300 Histone Acetyltransferase Domain in Complex with A Bisubstrate Inhibitor, Lys-Coa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1523

b:43.6
occ:0.86
 O A:HOH1676 3.4 24.7 1.0

Bromine binding site 4 out of 5 in 3biy

Go back to Bromine Binding Sites List in 3biy
Bromine binding site 4 out of 5 in the Crystal Structure of P300 Histone Acetyltransferase Domain in Complex with A Bisubstrate Inhibitor, Lys-Coa


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Crystal Structure of P300 Histone Acetyltransferase Domain in Complex with A Bisubstrate Inhibitor, Lys-Coa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1524

b:46.4
occ:0.76
 O A:HOH1829 3.0 26.3 1.0
O A:HOH1713 3.2 22.2 1.0
CA A:CYS1408 3.8 21.1 1.0
N A:CYS1408 4.0 20.1 1.0
CB A:LYS1407 4.1 20.7 1.0
C A:LYS1407 4.1 19.1 1.0
CB A:CYS1408 4.2 21.7 1.0
O A:LYS1407 4.3 19.7 1.0
O A:HOH1820 4.6 40.6 1.0
CE A:LYS1407 4.6 28.8 1.0
O A:HOH1790 4.7 35.9 1.0
CA A:LYS1407 4.8 19.9 1.0
O46 A:01K700 4.8 33.5 1.0
O A:HOH1679 4.9 22.6 1.0

Bromine binding site 5 out of 5 in 3biy

Go back to Bromine Binding Sites List in 3biy
Bromine binding site 5 out of 5 in the Crystal Structure of P300 Histone Acetyltransferase Domain in Complex with A Bisubstrate Inhibitor, Lys-Coa


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 5 of Crystal Structure of P300 Histone Acetyltransferase Domain in Complex with A Bisubstrate Inhibitor, Lys-Coa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1525

b:45.8
occ:0.74
 O A:HOH1850 2.6 28.7 1.0
O A:HOH1679 3.1 22.6 1.0
N A:LYS1407 3.2 19.4 1.0
CA A:PRO1406 3.6 17.9 1.0
CB A:PRO1406 3.8 18.3 1.0
C A:PRO1406 4.0 18.4 1.0
CB A:LYS1407 4.0 20.7 1.0
CG A:LYS1407 4.2 24.2 1.0
CA A:LYS1407 4.2 19.9 1.0
CD A:LYS1407 4.5 25.9 1.0
O A:HOH1733 4.7 34.3 1.0
O A:HOH1829 5.0 26.3 1.0
N A:PRO1406 5.0 18.1 1.0

Reference:

X.Liu, L.Wang, K.Zhao, P.R.Thompson, Y.Hwang, R.Marmorstein, P.A.Cole. The Structural Basis of Protein Acetylation By the P300/Cbp Transcriptional Coactivator Nature V. 451 846 2008.
ISSN: ISSN 0028-0836
PubMed: 18273021
DOI: 10.1038/NATURE06546
Page generated: Wed Jul 10 19:08:24 2024

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