Bromine in the structure of Crystal Structure Of The Homo Sapiens Mitochondrial Ribosomal Decoding Site in the Presence of SRCL2 (A1555G Mutant, Br-Derivative) (pdb 3bnq)

The binding sites of Bromine atom in the structure of Crystal Structure Of The Homo Sapiens Mitochondrial Ribosomal Decoding Site in the Presence of SRCL2 (A1555G Mutant, Br-Derivative) (pdb code 3bnq). This binding sites where shown with 5.0 Angstroms radius around Bromine atom. The 3bnq structure was solved by J.KONDO, E.WESTHOF, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 49.8-2.0 Space group C121 a (A) 71.266 b (A) 76.056 c (A) 55.912 alpha (°) 90.00 beta (°) 117.06 gamma (°) 90.00 Rfactor (%) 22.9 Rfree (%) 26.9 Bromine Binding Sites: Bromine binding site 1 out of 4 in 3bnq Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Bromine in the PDB 3bnq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Bromine atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: C10, A: 5bu11, A: C12, A: Hoh309, A: Hoh313, A: Hoh314, A: Hoh328, conact list: Atom Atom Distance (A) Br N3 A:C10 3.95 Br C3' A:C10 4.29 Br C2 A:C10 4.12 Br C6 A:C10 3.64 Br N1 A:C10 3.95 Br C5 A:C10 3.47 Br C1' A:C10 4.81 Br O2 A:C10 4.93 Br C4 A:C10 3.63 Br C2' A:C10 4.50 Br O5' A:C10 4.93 Br N4 A:C10 4.18 Br N3 A:5bu11 4.16 Br C2 A:5bu11 4.72 Br C6 A:5bu11 2.84 Br N1 A:5bu11 4.13 Br C5 A:5bu11 1.93 Br P A:5bu11 4.67 Br C4 A:5bu11 2.91 Br OP2 A:5bu11 3.79 Br BR A:5bu11 0.00 Br O5' A:5bu11 4.45 Br O4 A:5bu11 3.18 Br C5 A:C12 4.96 Br N4 A:C12 4.62 Br O A:Hoh309 3.75 Br O A:Hoh313 3.20 Br O A:Hoh314 3.65 Br O A:Hoh328 3.45 interactive model: Bromine binding site 2 out of 4 in 3bnq Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Bromine in the PDB 3bnq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Bromine atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: C10, B: 5bu11, B: Hoh222, conact list: Atom Atom Distance (A) Br N3 B:C10 3.75 Br C3' B:C10 4.07 Br C2 B:C10 3.85 Br C6 B:C10 3.65 Br N1 B:C10 3.79 Br C5 B:C10 3.55 Br C1' B:C10 4.60 Br O2 B:C10 4.57 Br O3' B:C10 4.87 Br C4 B:C10 3.58 Br OP2 B:C10 4.85 Br C2' B:C10 4.28 Br O5' B:C10 4.53 Br N4 B:C10 4.15 Br N3 B:5bu11 4.14 Br C2 B:5bu11 4.71 Br C6 B:5bu11 2.83 Br N1 B:5bu11 4.14 Br C5 B:5bu11 1.91 Br P B:5bu11 4.64 Br C4 B:5bu11 2.89 Br OP2 B:5bu11 3.77 Br BR B:5bu11 0.00 Br O5' B:5bu11 4.50 Br O4 B:5bu11 3.16 Br O B:Hoh222 4.59 interactive model: Bromine binding site 3 out of 4 in 3bnq Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Bromine in the PDB 3bnq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Bromine atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: C: C10, C: 5bu11, C: C12, C: Hoh306, C: Hoh319, C: Hoh330, conact list: Atom Atom Distance (A) Br N3 C:C10 3.90 Br C3' C:C10 4.37 Br C2 C:C10 4.04 Br C6 C:C10 3.69 Br N1 C:C10 3.93 Br C5 C:C10 3.55 Br C1' C:C10 4.78 Br O2 C:C10 4.81 Br C4 C:C10 3.65 Br C2' C:C10 4.48 Br N4 C:C10 4.20 Br N3 C:5bu11 4.13 Br C2 C:5bu11 4.70 Br C6 C:5bu11 2.83 Br N1 C:5bu11 4.12 Br C5 C:5bu11 1.92 Br P C:5bu11 4.72 Br C4 C:5bu11 2.90 Br OP2 C:5bu11 3.86 Br BR C:5bu11 0.00 Br O5' C:5bu11 4.45 Br O4 C:5bu11 3.19 Br C5 C:C12 4.98 Br N4 C:C12 4.73 Br O C:Hoh306 4.42 Br O C:Hoh319 3.41 Br O C:Hoh330 4.29 interactive model: Bromine binding site 4 out of 4 in 3bnq Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Bromine in the PDB 3bnq. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Bromine atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: D: C8, D: 5bu9, conact list: Atom Atom Distance (A) Br N3 D:C8 3.84 Br C3' D:C8 4.05 Br C2 D:C8 3.90 Br C6 D:C8 3.55 Br N1 D:C8 3.75 Br C5 D:C8 3.48 Br C1' D:C8 4.56 Br O2 D:C8 4.63 Br O3' D:C8 4.86 Br C4 D:C8 3.63 Br OP2 D:C8 4.71 Br C2' D:C8 4.27 Br O5' D:C8 4.40 Br N4 D:C8 4.26 Br N3 D:5bu9 4.11 Br C2 D:5bu9 4.68 Br C6 D:5bu9 2.82 Br N1 D:5bu9 4.12 Br C5 D:5bu9 1.91 Br P D:5bu9 4.64 Br C4 D:5bu9 2.88 Br OP2 D:5bu9 3.83 Br BR D:5bu9 0.00 Br O5' D:5bu9 4.40 Br O4 D:5bu9 3.16 interactive model: