Bromine in PDB 3c0v: Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12

The structure of Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12, PDB code: 3c0v was solved by O.Pasternak, A.Bujacz, J.Biesiadka, G.Bujacz, M.Sikorski, M.Jaskolski, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.31 / 1.80
Space group	P 64
Cell size a, b, c (Å), α, β, γ (°)	113.219, 113.219, 85.077, 90.00, 90.00, 120.00
R / Rfree (%)	15.8 / 20.7

The structure of Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12 also contains other interesting chemical elements:

Tantalum	(Ta)	30 atoms
Sodium	(Na)	2 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60;

Binding sites:

The binding sites of Bromine atom in the Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12 (pdb code 3c0v). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 60 binding sites of Bromine where determined in the Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12, PDB code: 3c0v:
Jump to Bromine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Bromine binding site 1 out of 60 in the Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br158 b:30.6 occ:0.35 BR1 A:TBR158 0.0 30.6 0.3 TA2 A:TBR158 2.6 34.1 0.3 TA1 A:TBR158 2.6 36.9 0.3 NE2 A:GLN42 2.7 29.9 1.0 NH2 B:ARG14 3.1 37.3 0.5 NH1 B:ARG14 3.2 38.0 0.5 CZ B:ARG14 3.4 35.6 0.5 OE1 A:GLN42 3.5 30.5 1.0 CD A:GLN42 3.5 30.5 1.0 BR2 A:TBR158 3.6 32.3 0.3 BR5 A:TBR158 3.6 31.7 0.3 BRC A:TBR158 3.6 31.4 0.3 BR4 A:TBR158 3.8 32.9 0.3 TA3 A:TBR158 4.1 34.9 0.3 TA6 A:TBR158 4.3 33.8 0.3 NE B:ARG14 4.5 34.1 0.5 CG A:ASP40 4.6 26.2 1.0 CB A:ASP40 4.6 24.9 1.0 OD1 A:ASP40 4.7 27.5 1.0 CG A:GLN42 4.9 26.2 1.0 OD2 A:ASP40 5.0 31.3 1.0

Bromine binding site 2 out of 60 in the Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br158 b:32.3 occ:0.35 BR2 A:TBR158 0.0 32.3 0.3 O A:HOH278 2.3 50.7 1.0 TA1 A:TBR158 2.6 36.9 0.3 TA3 A:TBR158 2.6 34.9 0.3 OD2 A:ASP40 3.3 31.3 1.0 BR6 A:TBR158 3.5 32.6 0.3 BR1 A:TBR158 3.6 30.6 0.3 BR1 A:TBR159 3.6 36.3 0.2 BR3 A:TBR158 3.7 28.6 0.3 BRC A:TBR159 3.7 36.2 0.2 BR5 A:TBR158 3.7 31.7 0.3 CG A:ASP40 3.8 26.2 1.0 CB A:ASP40 3.9 24.9 1.0 TA5 A:TBR158 4.2 36.4 0.3 TA2 A:TBR158 4.2 34.1 0.3 TA2 A:TBR159 4.7 36.9 0.2 OD1 A:ASP40 4.8 27.5 1.0 NE2 A:GLN42 4.8 29.9 1.0 NH2 B:ARG14 4.8 37.3 0.5

Bromine binding site 3 out of 60 in the Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br158 b:28.6 occ:0.35 BR3 A:TBR158 0.0 28.6 0.3 OD2 A:ASP40 2.2 31.3 1.0 TA5 A:TBR158 2.6 36.4 0.3 TA1 A:TBR158 2.6 36.9 0.3 O A:HOH278 3.1 50.7 1.0 CG A:ASP40 3.1 26.2 1.0 OD1 A:ASP40 3.3 27.5 1.0 BR4 A:TBR158 3.4 32.9 0.3 BRB A:TBR158 3.5 32.4 0.3 BR6 A:TBR158 3.7 32.6 0.3 BR2 A:TBR158 3.7 32.3 0.3 ND2 A:ASN57 3.7 26.4 1.0 TA6 A:TBR158 4.1 33.8 0.3 CG A:ASN57 4.1 28.1 1.0 TA3 A:TBR158 4.2 34.9 0.3 CB A:ASN57 4.3 24.8 1.0 CB A:ASP40 4.4 24.9 1.0 NE2 A:GLN42 4.5 29.9 1.0 CE A:LYS39 4.7 38.8 1.0 CD A:LYS39 4.9 32.8 1.0 OD1 A:ASN57 4.9 30.0 1.0 CG A:LYS39 5.0 28.5 1.0

Bromine binding site 4 out of 60 in the Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br158 b:32.9 occ:0.35 BR4 A:TBR158 0.0 32.9 0.3 CD A:GLN42 2.2 30.5 1.0 NE2 A:GLN42 2.4 29.9 1.0 CG A:GLN42 2.5 26.2 1.0 TA6 A:TBR158 2.6 33.8 0.3 TA1 A:TBR158 2.6 36.9 0.3 OE1 A:GLN42 2.9 30.5 1.0 OD1 A:ASP40 3.3 27.5 1.0 BR3 A:TBR158 3.4 28.6 0.3 BRB A:TBR158 3.5 32.4 0.3 O A:HOH277 3.5 42.9 1.0 ND2 A:ASN57 3.6 26.4 1.0 BRC A:TBR158 3.6 31.4 0.3 BR1 A:TBR158 3.8 30.6 0.3 CG A:ASP40 3.9 26.2 1.0 O A:HOH255 3.9 36.2 1.0 CB A:GLN42 4.0 25.8 1.0 TA5 A:TBR158 4.0 36.4 0.3 OD2 A:ASP40 4.2 31.3 1.0 TA2 A:TBR158 4.2 34.1 0.3 CG A:ASN57 4.8 28.1 1.0 CA A:GLN42 4.9 26.2 1.0 CB A:ASP40 5.0 24.9 1.0

Bromine binding site 5 out of 60 in the Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 5 of Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br158 b:31.7 occ:0.35 BR5 A:TBR158 0.0 31.7 0.3 TA2 A:TBR158 2.6 34.1 0.3 TA3 A:TBR158 2.6 34.9 0.3 NE B:ARG14 2.9 34.1 0.5 CZ B:ARG14 3.1 35.6 0.5 CD B:ARG14 3.3 32.8 0.5 BR9 A:TBR158 3.5 30.2 0.3 NH1 B:ARG14 3.5 38.0 0.5 NH2 B:ARG14 3.6 37.3 0.5 BRA A:TBR158 3.6 33.0 0.3 BR1 A:TBR158 3.6 30.6 0.3 BR2 A:TBR158 3.7 32.3 0.3 TA4 A:TBR158 4.1 35.3 0.3 TA1 A:TBR158 4.2 36.9 0.3 CD B:ARG14 4.3 30.7 0.5 NE B:ARG14 4.6 31.2 0.5 BR1 A:TBR159 4.8 36.3 0.2 CG B:ARG14 4.8 29.0 0.5 CG B:ARG14 4.8 29.8 0.5

Bromine binding site 6 out of 60 in the Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 6 of Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br158 b:32.6 occ:0.35 BR6 A:TBR158 0.0 32.6 0.3 TA3 A:TBR158 2.6 34.9 0.3 TA5 A:TBR158 2.6 36.4 0.3 O A:HOH278 3.2 50.7 1.0 BR2 A:TBR158 3.5 32.3 0.3 BRA A:TBR158 3.6 33.0 0.3 BR3 A:TBR158 3.7 28.6 0.3 BR7 A:TBR158 3.7 31.5 0.3 TA1 A:TBR158 4.1 36.9 0.3 TA4 A:TBR158 4.2 35.3 0.3 CE A:LYS39 4.3 38.8 1.0 NZ A:LYS39 4.7 40.5 1.0 OD2 A:ASP40 4.8 31.3 1.0

Bromine binding site 7 out of 60 in the Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 7 of Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br158 b:31.5 occ:0.35 BR7 A:TBR158 0.0 31.5 0.3 TA5 A:TBR158 2.6 36.4 0.3 TA4 A:TBR158 2.6 35.3 0.3 BRA A:TBR158 3.6 33.0 0.3 BR8 A:TBR158 3.6 31.6 0.3 BRB A:TBR158 3.6 32.4 0.3 BR6 A:TBR158 3.7 32.6 0.3 TA3 A:TBR158 4.1 34.9 0.3 TA6 A:TBR158 4.2 33.8 0.3

Bromine binding site 8 out of 60 in the Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 8 of Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br158 b:31.6 occ:0.35 BR8 A:TBR158 0.0 31.6 0.3 TA4 A:TBR158 2.6 35.3 0.3 TA6 A:TBR158 2.6 33.8 0.3 O A:HOH277 3.0 42.9 1.0 BRB A:TBR158 3.6 32.4 0.3 BR7 A:TBR158 3.6 31.5 0.3 BR9 A:TBR158 3.6 30.2 0.3 BRC A:TBR158 3.8 31.4 0.3 TA5 A:TBR158 4.2 36.4 0.3 TA2 A:TBR158 4.2 34.1 0.3

Bromine binding site 9 out of 60 in the Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 9 of Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br158 b:30.2 occ:0.35 BR9 A:TBR158 0.0 30.2 0.3 TA2 A:TBR158 2.6 34.1 0.3 TA4 A:TBR158 2.6 35.3 0.3 BR5 A:TBR158 3.5 31.7 0.3 BRC A:TBR158 3.6 31.4 0.3 BR8 A:TBR158 3.6 31.6 0.3 BRA A:TBR158 3.7 33.0 0.3 TA6 A:TBR158 4.1 33.8 0.3 TA3 A:TBR158 4.1 34.9 0.3 OE2 B:GLU109 4.4 46.8 1.0 NH1 B:ARG14 4.6 38.0 0.5 CD B:ARG14 4.6 32.8 0.5

Bromine binding site 10 out of 60 in the Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 10 of Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br158 b:33.0 occ:0.35 BRA A:TBR158 0.0 33.0 0.3 TA3 A:TBR158 2.6 34.9 0.3 TA4 A:TBR158 2.6 35.3 0.3 BR7 A:TBR158 3.6 31.5 0.3 BR5 A:TBR158 3.6 31.7 0.3 BR6 A:TBR158 3.6 32.6 0.3 BR9 A:TBR158 3.7 30.2 0.3 TA5 A:TBR158 4.1 36.4 0.3 TA2 A:TBR158 4.2 34.1 0.3

O.Pasternak, A.Bujacz, J.Biesiadka, G.Bujacz, M.Sikorski, M.Jaskolski. Mad Phasing Using the (Ta(6)Br(12))(2+) Cluster: A Retrospective Study Acta Crystallogr.,Sect.D V. 64 595 2008.
ISSN: ISSN 0907-4449
PubMed: 18453695
DOI: 10.1107/S0907444908007853