Bromine in PDB 3dlu: Structures of SRP54 and SRP19, the Two Proteins Assembling the Ribonucleic Core of the Signal Recognition Particle From the Archaeon Pyrococcus Furiosus.

The structure of Structures of SRP54 and SRP19, the Two Proteins Assembling the Ribonucleic Core of the Signal Recognition Particle From the Archaeon Pyrococcus Furiosus., PDB code: 3dlu was solved by P.F.Egea, J.Napetschnig, P.Walter, R.M.Stroud, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.00 / 1.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	44.074, 79.699, 60.548, 90.00, 107.65, 90.00
R / Rfree (%)	19.1 / 22.5

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 39;

Binding sites:

The binding sites of Bromine atom in the Structures of SRP54 and SRP19, the Two Proteins Assembling the Ribonucleic Core of the Signal Recognition Particle From the Archaeon Pyrococcus Furiosus. (pdb code 3dlu). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 39 binding sites of Bromine where determined in the Structures of SRP54 and SRP19, the Two Proteins Assembling the Ribonucleic Core of the Signal Recognition Particle From the Archaeon Pyrococcus Furiosus., PDB code: 3dlu:
Jump to Bromine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Bromine binding site 1 out of 39 in the Structures of SRP54 and SRP19, the Two Proteins Assembling the Ribonucleic Core of the Signal Recognition Particle From the Archaeon Pyrococcus Furiosus.


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Structures of SRP54 and SRP19, the Two Proteins Assembling the Ribonucleic Core of the Signal Recognition Particle From the Archaeon Pyrococcus Furiosus. within 5.0Å range: probe atom residue distance (Å) B Occ A:Br107 b:21.8 occ:0.58 NE1 A:TRP7 3.1 17.1 1.0 O A:HOH195 3.1 32.2 1.0 BR B:BR110 3.4 38.6 0.6 N A:GLY71 3.7 18.6 1.0 CB A:PHE70 3.8 14.7 1.0 CA A:PHE70 3.8 21.1 1.0 CD B:ARG50 3.8 24.6 1.0 O A:HOH157 3.9 38.0 1.0 CD1 A:TRP7 3.9 17.7 1.0 CD2 A:PHE70 4.0 23.5 1.0 NH1 B:ARG50 4.0 24.5 1.0 O A:GLY71 4.2 14.9 1.0 CE2 A:TRP7 4.2 13.6 1.0 C A:PHE70 4.2 26.1 1.0 NE B:ARG50 4.4 17.3 1.0 CG A:PHE70 4.4 21.4 1.0 CE B:MET72 4.4 19.6 1.0 CZ B:ARG50 4.4 19.4 1.0 CG2 B:VAL74 4.5 17.3 1.0 CZ2 A:TRP7 4.7 15.5 1.0 CA A:GLY71 4.9 20.8 1.0 C A:GLY71 4.9 17.3 1.0

Bromine binding site 2 out of 39 in the Structures of SRP54 and SRP19, the Two Proteins Assembling the Ribonucleic Core of the Signal Recognition Particle From the Archaeon Pyrococcus Furiosus.


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Structures of SRP54 and SRP19, the Two Proteins Assembling the Ribonucleic Core of the Signal Recognition Particle From the Archaeon Pyrococcus Furiosus. within 5.0Å range: probe atom residue distance (Å) B Occ A:Br108 b:25.5 occ:0.43 BR A:BR125 2.8 51.6 0.4 O A:HOH192 3.1 25.6 1.0 N A:GLU30 3.2 14.3 1.0 O A:HOH149 3.6 33.7 1.0 NH1 A:ARG96 3.7 20.7 1.0 CB A:GLU30 3.8 16.1 1.0 CA A:VAL29 3.9 12.7 1.0 CB A:VAL29 4.0 14.0 1.0 C A:VAL29 4.0 15.6 1.0 CA A:GLU30 4.1 17.5 1.0 BR A:BR114 4.5 75.0 0.6 CG1 A:VAL29 4.5 15.9 1.0 NH2 A:ARG93 4.6 16.0 1.0 OG A:SER13 4.8 18.3 1.0 O A:GLU30 4.9 18.5 1.0

Bromine binding site 3 out of 39 in the Structures of SRP54 and SRP19, the Two Proteins Assembling the Ribonucleic Core of the Signal Recognition Particle From the Archaeon Pyrococcus Furiosus.


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Structures of SRP54 and SRP19, the Two Proteins Assembling the Ribonucleic Core of the Signal Recognition Particle From the Archaeon Pyrococcus Furiosus. within 5.0Å range: probe atom residue distance (Å) B Occ A:Br109 b:30.4 occ:0.43 NH1 A:ARG25 3.4 27.9 1.0 CZ A:ARG25 4.5 28.0 1.0 NH2 A:ARG25 4.8 20.8 1.0

Bromine binding site 4 out of 39 in the Structures of SRP54 and SRP19, the Two Proteins Assembling the Ribonucleic Core of the Signal Recognition Particle From the Archaeon Pyrococcus Furiosus.


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Structures of SRP54 and SRP19, the Two Proteins Assembling the Ribonucleic Core of the Signal Recognition Particle From the Archaeon Pyrococcus Furiosus. within 5.0Å range: probe atom residue distance (Å) B Occ A:Br110 b:25.2 occ:0.25 O A:HOH192 2.8 25.6 1.0 O A:ARG25 2.9 18.7 1.0 O A:ALA28 3.1 16.9 1.0 NH2 A:ARG93 3.2 16.0 1.0 O A:SER26 3.4 16.9 1.0 CA A:SER26 3.5 22.0 1.0 C A:SER26 3.6 18.6 1.0 C A:ARG25 3.8 16.2 1.0 CB A:SER13 4.1 15.1 1.0 N A:SER26 4.1 16.8 1.0 C A:ALA28 4.2 18.0 1.0 OG A:SER13 4.3 18.3 1.0 CZ A:ARG93 4.4 13.7 1.0 CB A:SER26 4.6 23.6 1.0 N A:ILE27 4.6 18.0 1.0 O A:HOH149 4.7 33.7 1.0 N A:ALA28 5.0 14.7 1.0

Bromine binding site 5 out of 39 in the Structures of SRP54 and SRP19, the Two Proteins Assembling the Ribonucleic Core of the Signal Recognition Particle From the Archaeon Pyrococcus Furiosus.


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 5 of Structures of SRP54 and SRP19, the Two Proteins Assembling the Ribonucleic Core of the Signal Recognition Particle From the Archaeon Pyrococcus Furiosus. within 5.0Å range: probe atom residue distance (Å) B Occ A:Br111 b:40.0 occ:0.39 O A:THR102 3.0 43.3 1.0 CB A:THR102 3.7 27.3 1.0 C A:THR102 3.7 39.1 1.0 CA A:THR102 3.9 22.2 1.0 CG A:LEU103 4.1 60.8 1.0 CD1 A:LEU103 4.3 63.7 1.0 OG1 A:THR102 4.4 29.9 1.0 CB A:LEU103 4.5 61.6 1.0 CG2 A:THR102 4.7 28.7 1.0 N A:LEU103 4.7 46.6 1.0

Bromine binding site 6 out of 39 in the Structures of SRP54 and SRP19, the Two Proteins Assembling the Ribonucleic Core of the Signal Recognition Particle From the Archaeon Pyrococcus Furiosus.


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 6 of Structures of SRP54 and SRP19, the Two Proteins Assembling the Ribonucleic Core of the Signal Recognition Particle From the Archaeon Pyrococcus Furiosus. within 5.0Å range: probe atom residue distance (Å) B Occ A:Br112 b:32.9 occ:0.42 O A:HOH155 2.9 32.2 1.0 BR B:BR108 3.2 20.9 0.6 O A:HOH197 3.6 43.1 1.0 CB A:ARG50 4.0 16.5 1.0 CG2 A:ILE49 4.0 21.1 1.0 CG2 A:VAL74 4.1 16.9 1.0 CD2 B:PHE70 4.1 25.6 1.0 CZ2 B:TRP7 4.2 13.8 1.0 O B:HOH221 4.3 32.5 1.0 CD A:ARG50 4.3 25.1 1.0 O B:HOH248 4.4 47.9 1.0 CG1 A:VAL74 4.4 13.6 1.0 CE2 B:PHE70 4.4 31.2 1.0 CB A:VAL74 4.4 14.8 1.0 NE1 B:TRP7 4.6 18.6 1.0 CE2 B:TRP7 4.8 13.0 1.0 CG A:ARG50 4.8 25.0 1.0

Bromine binding site 7 out of 39 in the Structures of SRP54 and SRP19, the Two Proteins Assembling the Ribonucleic Core of the Signal Recognition Particle From the Archaeon Pyrococcus Furiosus.


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 7 of Structures of SRP54 and SRP19, the Two Proteins Assembling the Ribonucleic Core of the Signal Recognition Particle From the Archaeon Pyrococcus Furiosus. within 5.0Å range: probe atom residue distance (Å) B Occ A:Br113 b:27.7 occ:0.29 O A:GLY20 2.7 13.6 1.0 BR B:BR107 2.8 24.3 0.3 O B:ARG3 2.9 17.2 1.0 CD1 A:ILE22 3.4 19.6 0.5 CA B:PHE4 3.4 15.8 1.0 CB B:PHE4 3.5 15.4 1.0 C A:GLY20 3.5 15.1 1.0 CG1 A:ILE22 3.5 27.2 0.5 CA A:GLY20 3.5 18.8 1.0 CZ3 A:TRP7 3.8 14.0 1.0 C B:ARG3 3.8 17.7 1.0 CE3 A:TRP7 4.1 15.2 1.0 CG A:GLU10 4.1 15.1 1.0 N B:PHE4 4.1 17.7 1.0 CG1 A:ILE22 4.1 15.6 0.5 O A:HOH137 4.4 26.6 1.0 CD1 A:ILE22 4.6 8.7 0.5 C B:PHE4 4.6 14.0 1.0 N B:VAL5 4.7 14.4 1.0 OE2 A:GLU10 4.7 21.8 1.0 N A:ARG21 4.7 14.3 1.0 N A:GLY20 4.8 16.2 1.0 CG B:PHE4 4.9 19.3 1.0 CD A:GLU10 5.0 19.2 1.0 CB A:ILE22 5.0 21.2 0.5

Bromine binding site 8 out of 39 in the Structures of SRP54 and SRP19, the Two Proteins Assembling the Ribonucleic Core of the Signal Recognition Particle From the Archaeon Pyrococcus Furiosus.


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 8 of Structures of SRP54 and SRP19, the Two Proteins Assembling the Ribonucleic Core of the Signal Recognition Particle From the Archaeon Pyrococcus Furiosus. within 5.0Å range: probe atom residue distance (Å) B Occ A:Br114 b:75.0 occ:0.61 CB A:GLU30 3.2 16.1 1.0 O A:HOH139 4.3 29.9 1.0 NH1 A:ARG96 4.5 20.7 1.0 BR A:BR108 4.5 25.5 0.4 CA A:GLU30 4.5 17.5 1.0 O A:GLU30 4.5 18.5 1.0 C A:GLU30 4.7 16.5 1.0 O A:HOH170 4.8 48.4 1.0

Bromine binding site 9 out of 39 in the Structures of SRP54 and SRP19, the Two Proteins Assembling the Ribonucleic Core of the Signal Recognition Particle From the Archaeon Pyrococcus Furiosus.


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 9 of Structures of SRP54 and SRP19, the Two Proteins Assembling the Ribonucleic Core of the Signal Recognition Particle From the Archaeon Pyrococcus Furiosus. within 5.0Å range: probe atom residue distance (Å) B Occ A:Br115 b:38.8 occ:0.45 NZ A:LYS45 3.1 41.4 1.0 CE A:LYS45 4.1 30.8 1.0

Bromine binding site 10 out of 39 in the Structures of SRP54 and SRP19, the Two Proteins Assembling the Ribonucleic Core of the Signal Recognition Particle From the Archaeon Pyrococcus Furiosus.


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 10 of Structures of SRP54 and SRP19, the Two Proteins Assembling the Ribonucleic Core of the Signal Recognition Particle From the Archaeon Pyrococcus Furiosus. within 5.0Å range: probe atom residue distance (Å) B Occ A:Br116 b:33.0 occ:0.33 O A:HOH201 2.8 33.1 1.0 CD1 A:ILE22 3.9 8.7 0.5 CG A:LYS81 3.9 17.8 1.0 N A:SER82 4.0 15.6 1.0 CG2 A:ILE22 4.0 26.7 0.5 CB A:SER82 4.1 26.5 1.0 CD A:LYS81 4.1 22.1 1.0 CA A:SER82 4.1 23.2 1.0 CB A:LYS81 4.2 20.4 1.0 CG2 A:ILE22 4.2 30.3 0.5 O A:HOH200 4.3 42.6 1.0 O A:HOH144 4.4 35.1 1.0 CE A:LYS81 4.4 13.0 1.0 O A:HOH145 4.4 33.6 1.0 C A:LYS81 4.5 21.0 1.0 CD1 A:LEU85 4.8 15.0 1.0 OG A:SER82 4.8 49.4 1.0 CA A:LYS81 5.0 22.9 1.0

P.F.Egea, J.Napetschnig, P.Walter, R.M.Stroud. Structures of SRP54 and SRP19, the Two Proteins That Organize the Ribonucleic Core of the Signal Recognition Particle From Pyrococcus Furiosus. Plos One V. 3 E3528 2008.
ISSN: ESSN 1932-6203
PubMed: 18953414
DOI: 10.1371/JOURNAL.PONE.0003528