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Bromine in PDB 3esp: Human Transthyretin (Ttr) Complexed with N-(3,5-Dibromo-4- Hydroxyphenyl)-3,5-Dimethyl-4-Hydroxybenzamide

Protein crystallography data

The structure of Human Transthyretin (Ttr) Complexed with N-(3,5-Dibromo-4- Hydroxyphenyl)-3,5-Dimethyl-4-Hydroxybenzamide, PDB code: 3esp was solved by S.Connelly, I.A.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.31
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 42.583, 85.337, 64.284, 90.00, 90.00, 90.00
R / Rfree (%) 17.7 / 20.1

Bromine Binding Sites:

The binding sites of Bromine atom in the Human Transthyretin (Ttr) Complexed with N-(3,5-Dibromo-4- Hydroxyphenyl)-3,5-Dimethyl-4-Hydroxybenzamide (pdb code 3esp). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 4 binding sites of Bromine where determined in the Human Transthyretin (Ttr) Complexed with N-(3,5-Dibromo-4- Hydroxyphenyl)-3,5-Dimethyl-4-Hydroxybenzamide, PDB code: 3esp:
Jump to Bromine binding site number: 1; 2; 3; 4;

Bromine binding site 1 out of 4 in 3esp

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Bromine binding site 1 out of 4 in the Human Transthyretin (Ttr) Complexed with N-(3,5-Dibromo-4- Hydroxyphenyl)-3,5-Dimethyl-4-Hydroxybenzamide


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Human Transthyretin (Ttr) Complexed with N-(3,5-Dibromo-4- Hydroxyphenyl)-3,5-Dimethyl-4-Hydroxybenzamide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br128

b:41.0
occ:0.50
BRAF A:DZ3128 0.0 41.0 0.5
CAP A:DZ3128 2.0 30.1 0.5
CAT A:DZ3128 3.0 30.3 0.5
CAH A:DZ3128 3.1 25.0 0.5
OAE A:DZ3128 3.2 30.3 0.5
O A:HOH204 3.4 31.8 1.0
O A:HOH164 3.5 36.8 1.0
CG2 A:THR106 3.8 16.6 1.0
CE A:MET13 3.9 19.9 1.0
CD A:LYS15 4.0 21.3 1.0
CAQ A:DZ3128 4.3 26.9 0.5
CAR A:DZ3128 4.4 23.0 0.5
CB A:LYS15 4.7 16.0 1.0
CB A:THR106 4.7 14.4 1.0
OG1 A:THR106 4.8 18.1 1.0
CAI A:DZ3128 4.8 24.1 0.5
NZ A:LYS15 4.9 25.4 1.0
CG A:LYS15 5.0 19.2 1.0

Bromine binding site 2 out of 4 in 3esp

Go back to Bromine Binding Sites List in 3esp
Bromine binding site 2 out of 4 in the Human Transthyretin (Ttr) Complexed with N-(3,5-Dibromo-4- Hydroxyphenyl)-3,5-Dimethyl-4-Hydroxybenzamide


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Human Transthyretin (Ttr) Complexed with N-(3,5-Dibromo-4- Hydroxyphenyl)-3,5-Dimethyl-4-Hydroxybenzamide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br128

b:26.3
occ:0.50
BRAG A:DZ3128 0.0 26.3 0.5
CAQ A:DZ3128 1.9 26.9 0.5
CAI A:DZ3128 2.7 24.1 0.5
CAT A:DZ3128 3.0 30.3 0.5
OAE A:DZ3128 3.3 30.3 0.5
NZ A:LYS15 3.5 25.4 1.0
CE A:LYS15 3.8 24.4 1.0
CAR A:DZ3128 4.0 23.0 0.5
CAP A:DZ3128 4.3 30.1 0.5
CAH A:DZ3128 4.6 25.0 0.5
CD A:LYS15 4.8 21.3 1.0
NAL A:DZ3128 4.9 18.8 0.5

Bromine binding site 3 out of 4 in 3esp

Go back to Bromine Binding Sites List in 3esp
Bromine binding site 3 out of 4 in the Human Transthyretin (Ttr) Complexed with N-(3,5-Dibromo-4- Hydroxyphenyl)-3,5-Dimethyl-4-Hydroxybenzamide


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Human Transthyretin (Ttr) Complexed with N-(3,5-Dibromo-4- Hydroxyphenyl)-3,5-Dimethyl-4-Hydroxybenzamide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br128

b:43.9
occ:0.50
BRAF B:DZ3128 0.0 43.9 0.5
CAP B:DZ3128 1.9 26.8 0.5
CAT B:DZ3128 2.7 23.3 0.5
CAH B:DZ3128 2.9 22.2 0.5
OAE B:DZ3128 3.0 21.8 0.5
O B:HOH171 3.3 36.7 1.0
CD B:LYS15 4.0 21.5 1.0
CAQ B:DZ3128 4.0 22.6 0.5
CG2 B:THR106 4.2 16.5 1.0
CAR B:DZ3128 4.2 19.6 0.5
CE B:MET13 4.2 21.5 1.0
CAI B:DZ3128 4.6 19.6 0.5
NZ B:LYS15 4.7 27.4 1.0
CB B:LYS15 4.8 15.2 1.0
CE B:LYS15 4.9 19.1 1.0
CG B:LYS15 4.9 18.0 1.0

Bromine binding site 4 out of 4 in 3esp

Go back to Bromine Binding Sites List in 3esp
Bromine binding site 4 out of 4 in the Human Transthyretin (Ttr) Complexed with N-(3,5-Dibromo-4- Hydroxyphenyl)-3,5-Dimethyl-4-Hydroxybenzamide


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Human Transthyretin (Ttr) Complexed with N-(3,5-Dibromo-4- Hydroxyphenyl)-3,5-Dimethyl-4-Hydroxybenzamide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br128

b:24.9
occ:0.50
BRAG B:DZ3128 0.0 24.9 0.5
CAQ B:DZ3128 1.8 22.6 0.5
CAI B:DZ3128 2.7 19.6 0.5
CAT B:DZ3128 2.8 23.3 0.5
OAE B:DZ3128 3.0 21.8 0.5
NZ B:LYS15 3.4 27.4 1.0
CAR B:DZ3128 4.0 19.6 0.5
CE B:LYS15 4.0 19.1 1.0
CAP B:DZ3128 4.0 26.8 0.5
CAH B:DZ3128 4.5 22.2 0.5
O B:HOH172 4.7 38.3 1.0
CD B:LYS15 4.9 21.5 1.0
NAL B:DZ3128 4.9 16.1 0.5

Reference:

S.M.Johnson, S.Connelly, I.A.Wilson, J.W.Kelly. Toward Optimization of the Second Aryl Substructure Common to Transthyretin Amyloidogenesis Inhibitors Using Biochemical and Structural Studies. J.Med.Chem. V. 52 1115 2009.
ISSN: ISSN 0022-2623
PubMed: 19191553
DOI: 10.1021/JM801347S
Page generated: Mon Jul 7 05:17:22 2025

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