Bromine in PDB 3lph: Crystal Structure of the Hiv-1 Rev Dimer

The structure of Crystal Structure of the Hiv-1 Rev Dimer, PDB code: 3lph was solved by M.D.Daugherty, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.14 / 2.50
Space group	P 64 2 2
Cell size a, b, c (Å), α, β, γ (°)	115.801, 115.801, 81.163, 90.00, 90.00, 120.00
R / Rfree (%)	22.6 / 26.1

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 13;

Binding sites:

The binding sites of Bromine atom in the Crystal Structure of the Hiv-1 Rev Dimer (pdb code 3lph). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 13 binding sites of Bromine where determined in the Crystal Structure of the Hiv-1 Rev Dimer, PDB code: 3lph:
Jump to Bromine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Bromine binding site 1 out of 13 in the Crystal Structure of the Hiv-1 Rev Dimer


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of the Hiv-1 Rev Dimer within 5.0Å range: probe atom residue distance (Å) B Occ A:Br73 b:89.5 occ:1.00 O6 A:MLI76 3.2 42.2 1.0 O A:HOH89 3.3 54.6 1.0 NE A:ARG42 3.5 53.3 1.0 CA A:PRO31 3.8 53.7 1.0 O A:HOH79 3.9 50.4 1.0 CG A:PRO31 3.9 54.2 1.0 CB A:PRO31 4.0 51.4 1.0 C2 A:MLI76 4.0 52.7 1.0 O7 A:MLI76 4.0 65.1 1.0 CG A:ARG42 4.2 48.5 1.0 CD A:ARG42 4.2 48.4 1.0 N A:PRO31 4.2 58.4 1.0 NH2 A:ARG42 4.3 51.2 1.0 CZ A:ARG42 4.3 52.3 1.0 O A:PRO29 4.3 59.4 1.0 CB A:ARG38 4.4 46.6 1.0 O A:ARG38 4.4 41.2 1.0 CG A:PRO29 4.6 56.7 1.0 CD A:PRO31 4.6 57.5 1.0 CG A:ARG38 4.7 56.2 1.0 C A:ASN30 4.8 61.2 1.0 CA A:ARG38 4.8 43.1 1.0 O A:ASN30 4.9 60.7 1.0 C1 A:MLI76 4.9 57.2 1.0 C A:ARG38 5.0 46.7 1.0

Bromine binding site 2 out of 13 in the Crystal Structure of the Hiv-1 Rev Dimer


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of the Hiv-1 Rev Dimer within 5.0Å range: probe atom residue distance (Å) B Occ A:Br74 b:77.5 occ:0.84 O A:HOH94 2.6 78.3 1.0 CD A:ARG43 3.8 34.1 1.0 NE A:ARG43 3.8 45.0 1.0 O A:HOH78 3.8 35.1 1.0 CB A:ARG43 4.2 36.3 1.0 O A:ARG39 4.2 43.1 1.0 CG A:ARG43 4.4 28.9 1.0 CB A:ARG39 4.4 34.5 1.0 C A:ARG39 4.5 47.3 1.0 OD1 A:ASN40 4.8 48.7 1.0

Bromine binding site 3 out of 13 in the Crystal Structure of the Hiv-1 Rev Dimer


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Crystal Structure of the Hiv-1 Rev Dimer within 5.0Å range: probe atom residue distance (Å) B Occ A:Br75 b:66.7 occ:0.75 O A:HOH82 2.9 44.9 1.0 ND2 A:ASN40 3.2 56.0 1.0 CA A:ALA37 3.7 37.3 1.0 CD A:GLN36 3.7 41.6 1.0 NE2 A:GLN36 3.7 36.2 1.0 CG A:GLN36 3.8 38.4 1.0 N A:ALA37 3.8 33.3 1.0 CB A:ALA37 3.9 22.3 1.0 C A:GLN36 4.1 44.7 1.0 O A:GLN36 4.2 42.1 1.0 OE1 A:GLN36 4.2 39.0 1.0 CG A:ASN40 4.3 58.0 1.0 CB A:GLN36 4.6 40.0 1.0 CB A:ASN40 4.6 54.0 1.0

Bromine binding site 4 out of 13 in the Crystal Structure of the Hiv-1 Rev Dimer


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Crystal Structure of the Hiv-1 Rev Dimer within 5.0Å range: probe atom residue distance (Å) B Occ B:Br71 b:0.2 occ:0.87 ND2 B:ASN30 3.8 53.5 1.0 CG B:GLU32 4.0 51.7 1.0 CG B:ASN30 4.8 55.1 1.0 CB B:GLU32 4.9 52.8 1.0 OD1 B:ASN30 4.9 56.1 1.0

Bromine binding site 5 out of 13 in the Crystal Structure of the Hiv-1 Rev Dimer


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 5 of Crystal Structure of the Hiv-1 Rev Dimer within 5.0Å range: probe atom residue distance (Å) B Occ B:Br72 b:73.2 occ:0.57 O B:HOH87 2.9 67.4 1.0 NH1 B:ARG17 3.2 94.2 1.0 NH1 A:ARG17 4.2 0.2 1.0 CD2 B:LEU18 4.2 50.0 1.0 CG A:LYS14 4.2 62.2 1.0 CD A:ARG17 4.3 90.4 1.0 CD B:ARG17 4.4 79.6 1.0 CZ B:ARG17 4.4 95.1 1.0 CB B:ARG17 4.5 56.7 1.0 CA A:LYS14 4.8 62.7 1.0 NE B:ARG17 4.9 89.3 1.0 CG B:LEU18 5.0 54.0 1.0 CB A:LYS14 5.0 60.8 1.0 CE A:LYS14 5.0 75.0 1.0

Bromine binding site 6 out of 13 in the Crystal Structure of the Hiv-1 Rev Dimer


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 6 of Crystal Structure of the Hiv-1 Rev Dimer within 5.0Å range: probe atom residue distance (Å) B Occ B:Br73 b:98.0 occ:0.79 O B:HOH85 3.1 74.5 1.0 NE B:ARG60 3.2 90.1 1.0 O C:HOH80 3.6 54.1 1.0 CD B:ARG60 3.8 88.7 1.0 CD1 C:ILE19 4.0 49.6 1.0 CD C:ARG60 4.1 81.4 1.0 CA B:GLU57 4.2 61.4 1.0 CZ B:ARG60 4.3 90.5 1.0 CG C:ARG60 4.3 68.1 1.0 CB B:ARG60 4.3 86.0 1.0 N B:GLU57 4.4 65.1 1.0 NH2 B:ARG60 4.4 90.2 1.0 CD1 C:LEU64 4.6 59.9 1.0 CG2 C:ILE19 4.6 42.8 1.0 CB B:GLU57 4.6 61.9 1.0 O B:SER56 4.6 70.8 1.0 C B:SER56 4.6 68.2 1.0 CG B:ARG60 4.7 88.2 1.0 OG B:SER56 4.8 74.9 1.0 CB C:ARG60 4.9 60.0 1.0

Bromine binding site 7 out of 13 in the Crystal Structure of the Hiv-1 Rev Dimer


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 7 of Crystal Structure of the Hiv-1 Rev Dimer within 5.0Å range: probe atom residue distance (Å) B Occ B:Br74 b:54.5 occ:0.37 NH1 B:ARG60 2.9 91.2 1.0 NZ C:LYS20 3.3 83.7 1.0 CG C:LYS20 3.6 70.3 1.0 OG B:SER61 3.9 81.3 1.0 CA C:LYS20 4.0 55.9 1.0 CB C:LYS20 4.1 58.0 1.0 CZ B:ARG60 4.2 90.5 1.0 CA B:SER61 4.2 87.6 1.0 CG B:ARG60 4.3 88.2 1.0 CD C:LYS20 4.4 79.1 1.0 CE C:LYS20 4.4 83.1 1.0 O C:LYS20 4.5 59.3 1.0 CB B:SER61 4.5 85.2 1.0 CD B:ARG60 4.5 88.7 1.0 N B:SER61 4.6 82.6 1.0 C C:LYS20 4.7 58.7 1.0 CB C:TYR23 4.8 47.9 1.0 NE B:ARG60 4.8 90.1 1.0 CD2 C:TYR23 5.0 44.5 1.0

Bromine binding site 8 out of 13 in the Crystal Structure of the Hiv-1 Rev Dimer


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 8 of Crystal Structure of the Hiv-1 Rev Dimer within 5.0Å range: probe atom residue distance (Å) B Occ C:Br71 b:54.4 occ:0.80 O C:HOH75 3.5 41.5 1.0 O C:HOH84 3.7 49.4 1.0 CA C:PRO31 3.8 66.9 1.0 NE C:ARG42 3.8 81.9 1.0 CG C:ARG38 3.9 72.3 1.0 CB C:ARG38 4.0 67.7 1.0 CB C:PRO31 4.0 65.6 1.0 CD C:ARG38 4.2 80.3 1.0 CG C:PRO31 4.2 60.4 1.0 NH1 C:ARG38 4.3 97.5 1.0 CD C:ARG42 4.4 79.8 1.0 N C:PRO31 4.4 62.8 1.0 O C:PRO29 4.4 52.0 1.0 CG C:ARG42 4.5 78.8 1.0 O C:ARG38 4.5 45.4 1.0 CA C:ARG38 4.6 68.8 1.0 CZ C:ARG42 4.6 85.6 1.0 NH2 C:ARG42 4.7 92.1 1.0 CD C:PRO31 4.9 56.3 1.0 C C:PRO31 4.9 74.1 1.0 C C:ARG38 4.9 61.1 1.0 N C:GLU32 4.9 76.1 1.0 C C:ASN30 5.0 66.4 1.0

Bromine binding site 9 out of 13 in the Crystal Structure of the Hiv-1 Rev Dimer


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 9 of Crystal Structure of the Hiv-1 Rev Dimer within 5.0Å range: probe atom residue distance (Å) B Occ C:Br72 b:0.5 occ:0.92 CD C:ARG17 3.9 70.7 1.0 NH1 C:ARG17 4.0 68.8 1.0 NE D:ARG17 4.1 91.0 1.0 CG C:LYS14 4.3 79.9 1.0 CD2 D:LEU18 4.4 51.7 1.0 CG D:LYS14 4.5 88.5 1.0 CE D:LYS14 4.5 93.9 1.0 NE C:ARG17 4.8 73.7 1.0 CD D:ARG17 4.8 86.1 1.0 CA C:LYS14 4.8 67.7 1.0 CB C:ARG17 4.8 62.1 1.0 CZ C:ARG17 4.8 69.5 1.0 CG D:LEU18 4.9 52.4 1.0 CB C:LYS14 4.9 72.2 1.0 NH2 D:ARG17 4.9 91.8 1.0 CG C:ARG17 4.9 66.0 1.0 CZ D:ARG17 5.0 90.7 1.0 CB D:ARG17 5.0 63.8 1.0

Bromine binding site 10 out of 13 in the Crystal Structure of the Hiv-1 Rev Dimer


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 10 of Crystal Structure of the Hiv-1 Rev Dimer within 5.0Å range: probe atom residue distance (Å) B Occ C:Br73 b:97.6 occ:0.65 CA C:SER61 3.7 61.8 1.0 NE2 B:GLN49 3.8 48.8 1.0 CE1 B:HIS53 4.0 54.7 1.0 CB C:SER61 4.0 64.4 1.0 CA C:GLY65 4.1 74.0 1.0 CE1 B:TYR23 4.1 54.2 1.0 N C:SER61 4.4 61.8 1.0 OG C:SER61 4.4 73.9 1.0 NE C:ARG60 4.4 91.4 1.0 CD1 B:TYR23 4.5 53.7 1.0 NE2 B:HIS53 4.5 54.8 1.0 NH2 C:ARG60 4.6 94.6 1.0 N C:GLY65 4.6 73.9 1.0 O C:SER61 4.8 61.2 1.0 C C:SER61 4.8 62.5 1.0 O C:ARG60 4.8 49.2 1.0 C C:ARG60 4.9 56.7 1.0 CZ B:TYR23 4.9 56.9 1.0

M.D.Daugherty, B.Liu, A.D.Frankel. Structural Basis For Cooperative Rna Binding and Export Complex Assembly By Hiv Rev. Nat.Struct.Mol.Biol. V. 17 1337 2010.
ISSN: ISSN 1545-9993
PubMed: 20953181
DOI: 10.1038/NSMB.1902