Bromine in PDB 3lwp: Structure of H/Aca Rnp Bound to A Substrate Rna Containing 5BRDU

The structure of Structure of H/Aca Rnp Bound to A Substrate Rna Containing 5BRDU, PDB code: 3lwp was solved by J.Zhou, B.Liang, C.Lv, W.Yang, H.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.84 / 2.50
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	188.173, 64.580, 83.798, 90.00, 90.00, 90.00
R / Rfree (%)	20.3 / 25.5

The structure of Structure of H/Aca Rnp Bound to A Substrate Rna Containing 5BRDU also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Bromine atom in the Structure of H/Aca Rnp Bound to A Substrate Rna Containing 5BRDU (pdb code 3lwp). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Structure of H/Aca Rnp Bound to A Substrate Rna Containing 5BRDU, PDB code: 3lwp:

Bromine binding site 1 out of 1 in the Structure of H/Aca Rnp Bound to A Substrate Rna Containing 5BRDU


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Structure of H/Aca Rnp Bound to A Substrate Rna Containing 5BRDU within 5.0Å range: probe atom residue distance (Å) B Occ E:Br10 b:0.2 occ:1.00 BR E:BRU10 0.0 0.2 1.0 C5 E:BRU10 1.9 79.1 1.0 C6 E:BRU10 2.8 76.2 1.0 C4 E:BRU10 2.9 70.0 1.0 O4 E:BRU10 3.2 58.7 1.0 N A:ILE183 3.6 33.9 1.0 O A:THR181 3.7 47.9 1.0 OH A:TYR113 3.8 24.3 1.0 CG1 A:ILE183 3.8 32.6 1.0 CZ A:TYR113 4.0 19.6 1.0 CD2 A:LEU203 4.1 38.8 1.0 CA A:TYR182 4.1 48.2 1.0 N1 E:BRU10 4.1 73.4 1.0 O E:HOH18 4.1 36.6 1.0 N3 E:BRU10 4.1 68.9 1.0 CB A:ILE183 4.2 35.3 1.0 CE2 A:TYR113 4.3 16.3 1.0 C A:TYR182 4.3 46.3 1.0 CA A:ILE183 4.5 40.8 1.0 CE1 A:TYR113 4.6 25.3 1.0 C A:THR181 4.7 42.5 1.0 C2 E:BRU10 4.7 69.7 1.0 N A:TYR182 4.9 39.7 1.0 CB A:TYR182 4.9 56.5 1.0 CD1 A:ILE183 5.0 32.4 1.0

J.Zhou, C.Lv, B.Liang, M.Chen, W.Yang, H.Li. Glycosidic Bond Conformation Preference Plays A Pivotal Role in Catalysis of Rna Pseudouridylation: A Combined Simulation and Structural Study. J.Mol.Biol. V. 401 690 2010.
ISSN: ISSN 0022-2836
PubMed: 20615421
DOI: 10.1016/J.JMB.2010.06.061