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Bromine in PDB 3lz3: Human Aldose Reductase Mutant T113S Complexed with IDD388

Enzymatic activity of Human Aldose Reductase Mutant T113S Complexed with IDD388

All present enzymatic activity of Human Aldose Reductase Mutant T113S Complexed with IDD388:
1.1.1.21;

Protein crystallography data

The structure of Human Aldose Reductase Mutant T113S Complexed with IDD388, PDB code: 3lz3 was solved by C.Koch, A.Heine, G.Klebe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.03
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 49.220, 66.780, 47.280, 90.00, 92.31, 90.00
R / Rfree (%) 10.6 / 12.2

Other elements in 3lz3:

The structure of Human Aldose Reductase Mutant T113S Complexed with IDD388 also contains other interesting chemical elements:

Fluorine (F) 1 atom
Chlorine (Cl) 1 atom

Bromine Binding Sites:

The binding sites of Bromine atom in the Human Aldose Reductase Mutant T113S Complexed with IDD388 (pdb code 3lz3). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Human Aldose Reductase Mutant T113S Complexed with IDD388, PDB code: 3lz3:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in 3lz3

Go back to Bromine Binding Sites List in 3lz3
Bromine binding site 1 out of 2 in the Human Aldose Reductase Mutant T113S Complexed with IDD388


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Human Aldose Reductase Mutant T113S Complexed with IDD388 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br600

b:5.9
occ:0.71
BR8 A:388600 0.0 5.9 0.7
C5 A:388600 1.9 4.1 1.0
BR A:BR700 2.1 10.9 0.3
C6 A:388600 2.8 4.1 1.0
OG A:SER113 2.8 1.2 0.3
C4 A:388600 2.8 4.1 1.0
OG A:SER113 3.8 6.6 0.7
CB A:SER113 3.9 3.4 0.7
CZ A:PHE115 3.9 3.3 1.0
CB A:CYS303 3.9 5.1 1.0
CB A:TRP111 3.9 1.6 1.0
CB A:SER113 4.0 3.8 0.3
CE3 A:TRP111 4.0 2.0 1.0
C7 A:388600 4.0 3.4 1.0
SG A:CYS303 4.1 5.6 1.0
CG A:TRP111 4.1 1.6 1.0
CD2 A:TRP111 4.1 1.4 1.0
C3 A:388600 4.1 3.9 1.0
CE1 A:PHE115 4.2 3.4 1.0
CD1 A:TYR309 4.4 4.4 1.0
C2 A:388600 4.6 3.0 1.0
CE1 A:TYR309 4.7 4.9 1.0
SG A:CYS80 4.8 2.0 1.0
CZ3 A:TRP111 4.8 2.7 1.0
CD A:PRO310 5.0 2.6 1.0
CD1 A:TRP111 5.0 2.0 1.0

Bromine binding site 2 out of 2 in 3lz3

Go back to Bromine Binding Sites List in 3lz3
Bromine binding site 2 out of 2 in the Human Aldose Reductase Mutant T113S Complexed with IDD388


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Human Aldose Reductase Mutant T113S Complexed with IDD388 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br700

b:10.9
occ:0.29
BR8 A:388600 2.1 5.9 0.7
OG A:SER113 2.3 1.2 0.3
OG A:SER113 2.6 6.6 0.7
CB A:SER113 3.2 3.4 0.7
CB A:SER113 3.2 3.8 0.3
CD A:PRO310 3.4 2.6 1.0
C5 A:388600 3.6 4.1 1.0
N A:SER113 3.7 1.8 1.0
CB A:TRP111 3.7 1.6 1.0
CE3 A:TRP111 3.8 2.0 1.0
CD A:PRO112 4.0 1.7 1.0
CA A:TYR309 4.0 3.7 1.0
C6 A:388600 4.0 4.1 1.0
CA A:SER113 4.1 2.3 0.7
CG A:PRO112 4.1 2.6 1.0
CA A:SER113 4.1 2.4 0.3
O A:ASP308 4.2 3.5 1.0
N A:PRO112 4.2 1.1 1.0
CD1 A:TYR309 4.3 4.4 1.0
CG A:PRO310 4.3 2.9 1.0
CD2 A:TRP111 4.4 1.4 1.0
CG A:TRP111 4.4 1.6 1.0
N A:PRO310 4.5 2.8 1.0
N A:TYR309 4.6 3.3 1.0
C A:ASP308 4.6 2.6 1.0
C A:TRP111 4.6 1.0 1.0
C4 A:388600 4.7 4.1 1.0
C A:PRO112 4.7 2.2 1.0
CA A:TRP111 4.7 1.0 1.0
CZ3 A:TRP111 4.7 2.7 1.0
C A:TYR309 4.8 3.2 1.0
CB A:TYR309 4.8 4.0 1.0
CA A:PRO112 4.9 1.7 1.0
CG A:TYR309 4.9 4.4 1.0

Reference:

C.Koch, A.Heine, G.Klebe. Tracing the Detail: How Mutations Affect Binding Modes and Thermodynamic Signatures of Closely Related Aldose Reductase Inhibitors J.Mol.Biol. V. 406 700 2011.
ISSN: ISSN 0022-2836
PubMed: 21185307
DOI: 10.1016/J.JMB.2010.11.058
Page generated: Wed Jul 10 19:56:23 2024

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