Chemical elements
  Bromine
    Isotopes
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    Application
    PDB 101d-1f5m
    PDB 1f6j-1kdh
    PDB 1kfo-1o3l
    PDB 1o5m-1to3
    PDB 1uhj-1zpz
    PDB 1zw9-2fkk
    PDB 2fpr-2j9m
    PDB 2ja5-2qfe
    PDB 2qgd-2wb9
    PDB 2wbb-3biy
    PDB 3bm9-3eki
    PDB 3en9-3hvo
    PDB 3hzw-3lbz
    PDB 3ld5-3ot3
      3ld5
      3lep
      3llp
      3lm7
      3loa
      3lok
      3lph
      3lqg
      3lql
      3lwo
      3lwp
      3lz3
      3lz5
      3m3g
      3m4h
      3m8p
      3m96
      3ma6
      3md9
      3mec
      3med
      3mei
      3mng
      3mpr
      3mt7
      3mta
      3n7r
      3n7s
      3nef
      3neg
      3ni3
      3nj0
      3nj1
      3njo
      3nmh
      3nmn
      3nmp
      3nmt
      3nmv
      3nr4
      3ns2
      3nyh
      3o7o
      3o8c
      3o8r
      3ofm
      3ogd
      3oh6
      3oh9
      3ot3
    PDB 3oyp-4de3
    PDB 4dey-9est

Bromine in the structure of Regulatory Motif From the Thymidylate Synthase Mrna (pdb 3mei)






The binding sites of Bromine atom in the structure of Regulatory Motif From the Thymidylate Synthase Mrna (pdb code 3mei). This binding sites where shown with 5.0 Angstroms radius around Bromine atom.
The 3mei structure was solved by S.DIBROV, J.MCLEAN, T.HERMANN, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)28.2-2.0
Space groupP1211
a (A)32.928
b (A)38.564
c (A)41.985
alpha (°)90.00
beta (°)100.10
gamma (°)90.00
Rfactor (%)17.6
Rfree (%)23.8


Bromine Binding Sites:

Bromine binding site 1 out of 2 in 3mei


Bromine binding site 1 out of 2 in 3mei
Click to enlarge
stereopicture of Bromine binding site 1 out of 2 in 3mei
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Bromine in the PDB 3mei. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Bromine atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: A11, A: 5bu12, A: Hoh34, A: Hoh62, A: Hoh92,

conact list:


AtomAtomDistance (A)
BrN9 A:A114.15
BrC3' A:A114.21
BrC8 A:A113.70
BrC6 A:A114.76
BrC5 A:A114.02
BrC1' A:A114.95
BrN7 A:A113.61
BrO3' A:A114.87
BrC4 A:A114.37
BrOP2 A:A114.77
BrC2' A:A114.61
BrO5' A:A114.75
BrN3 A:5bu124.11
BrC2 A:5bu124.63
BrC6 A:5bu122.87
BrN1 A:5bu124.15
BrC5 A:5bu121.90
BrP A:5bu124.61
BrC4 A:5bu122.87
BrOP2 A:5bu123.74
BrBR A:5bu120.00
BrO5' A:5bu124.46
BrO4 A:5bu123.07
BrO A:Hoh343.90
BrO A:Hoh623.87
BrO A:Hoh923.73

interactive model:


Bromine binding site 2 out of 2 in 3mei


Bromine binding site 2 out of 2 in 3mei
Click to enlarge
stereopicture of Bromine binding site 2 out of 2 in 3mei
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Bromine in the PDB 3mei. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Bromine atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: A11, B: 5bu12, B: G13, B: Hoh32, B: Hoh35,

conact list:


AtomAtomDistance (A)
BrN9 B:A113.85
BrN3 B:A114.62
BrC3' B:A114.07
BrC8 B:A113.69
BrC6 B:A114.48
BrC5 B:A113.81
BrC1' B:A114.58
BrN7 B:A113.69
BrO3' B:A114.84
BrC4 B:A113.91
BrC2' B:A114.20
BrO5' B:A114.82
BrN3 B:5bu124.11
BrC2 B:5bu124.61
BrC6 B:5bu122.85
BrN1 B:5bu124.12
BrC5 B:5bu121.90
BrP B:5bu124.56
BrC4 B:5bu122.87
BrOP2 B:5bu123.68
BrBR B:5bu120.00
BrO5' B:5bu124.34
BrO4 B:5bu123.10
BrN7 B:G134.94
BrO B:Hoh323.78
BrO B:Hoh353.60

interactive model:




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