Atomistry » Bromine » PDB 3ma6-3oji » 3mt7
Atomistry »
  Bromine »
    PDB 3ma6-3oji »
      3mt7 »

Bromine in PDB 3mt7: Glycogen Phosphorylase Complexed with 4-Bromobenzaldehyde-4-(Beta-D- Glucopyranosyl)-Thiosemicarbazone

Enzymatic activity of Glycogen Phosphorylase Complexed with 4-Bromobenzaldehyde-4-(Beta-D- Glucopyranosyl)-Thiosemicarbazone

All present enzymatic activity of Glycogen Phosphorylase Complexed with 4-Bromobenzaldehyde-4-(Beta-D- Glucopyranosyl)-Thiosemicarbazone:
2.4.1.1;

Protein crystallography data

The structure of Glycogen Phosphorylase Complexed with 4-Bromobenzaldehyde-4-(Beta-D- Glucopyranosyl)-Thiosemicarbazone, PDB code: 3mt7 was solved by K.-M.Alexacou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.98 / 2.00
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 128.190, 128.190, 115.920, 90.00, 90.00, 90.00
R / Rfree (%) 17.7 / 20.9

Bromine Binding Sites:

The binding sites of Bromine atom in the Glycogen Phosphorylase Complexed with 4-Bromobenzaldehyde-4-(Beta-D- Glucopyranosyl)-Thiosemicarbazone (pdb code 3mt7). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Glycogen Phosphorylase Complexed with 4-Bromobenzaldehyde-4-(Beta-D- Glucopyranosyl)-Thiosemicarbazone, PDB code: 3mt7:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in 3mt7

Go back to Bromine Binding Sites List in 3mt7
Bromine binding site 1 out of 2 in the Glycogen Phosphorylase Complexed with 4-Bromobenzaldehyde-4-(Beta-D- Glucopyranosyl)-Thiosemicarbazone


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Glycogen Phosphorylase Complexed with 4-Bromobenzaldehyde-4-(Beta-D- Glucopyranosyl)-Thiosemicarbazone within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br920

b:37.6
occ:1.00
BR1 A:16O920 0.0 37.6 1.0
C12 A:16O920 1.9 32.4 1.0
C11 A:16O920 2.8 30.1 1.0
C13 A:16O920 2.8 30.9 1.0
CG A:PRO229 3.5 19.3 1.0
CD1 A:LEU63 3.7 25.1 1.0
CZ3 A:TRP67 3.8 22.6 1.0
CD A:PRO229 3.9 18.3 1.0
CB A:ARG60 4.0 20.2 1.0
CE3 A:TRP67 4.1 22.9 1.0
CB A:LEU63 4.1 24.1 1.0
C10 A:16O920 4.1 29.5 1.0
O A:ARG60 4.1 20.5 1.0
C14 A:16O920 4.1 29.2 1.0
CB A:PRO229 4.2 18.7 1.0
CG A:ARG60 4.5 21.3 1.0
CA A:ARG60 4.5 20.2 1.0
CD A:ARG60 4.6 21.9 1.0
CG A:LEU63 4.6 24.9 1.0
C9 A:16O920 4.6 29.4 1.0
C A:ARG60 4.7 20.1 1.0
CE3 A:TRP189 4.8 21.0 1.0
CH2 A:TRP67 4.8 22.0 1.0
O A:TRP189 5.0 23.6 1.0

Bromine binding site 2 out of 2 in 3mt7

Go back to Bromine Binding Sites List in 3mt7
Bromine binding site 2 out of 2 in the Glycogen Phosphorylase Complexed with 4-Bromobenzaldehyde-4-(Beta-D- Glucopyranosyl)-Thiosemicarbazone


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Glycogen Phosphorylase Complexed with 4-Bromobenzaldehyde-4-(Beta-D- Glucopyranosyl)-Thiosemicarbazone within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br998

b:46.1
occ:1.00
BR1 A:16O998 0.0 46.1 1.0
C12 A:16O998 1.9 42.5 1.0
C13 A:16O998 2.8 41.3 1.0
C11 A:16O998 2.9 41.2 1.0
OD1 A:ASN282 3.4 36.2 1.0
O A:ASN282 3.5 32.7 1.0
CB A:TYR280 3.6 20.7 1.0
O A:TYR280 3.7 20.7 1.0
CG A:ASN282 3.7 33.6 1.0
ND2 A:ASN282 3.8 35.3 1.0
CZ A:ARG292 3.8 24.0 1.0
NH1 A:ARG292 3.9 22.0 1.0
NH2 A:ARG292 3.9 24.3 1.0
C A:ASN282 4.0 32.0 1.0
C A:TYR280 4.0 21.5 1.0
N A:ASN282 4.1 28.8 1.0
C14 A:16O998 4.1 39.8 1.0
C10 A:16O998 4.2 39.7 1.0
NE A:ARG292 4.4 23.4 1.0
O A:HOH864 4.4 32.9 1.0
CA A:ASN282 4.4 31.1 1.0
CA A:TYR280 4.4 20.5 1.0
O A:HOH859 4.5 30.8 1.0
O A:HOH865 4.6 31.6 1.0
C9 A:16O998 4.7 38.2 1.0
CB A:ASN282 4.7 31.6 1.0
CG A:TYR280 4.7 21.3 1.0
N A:ASP283 4.7 32.9 1.0
N A:PRO281 4.8 22.7 1.0
ND2 A:ASN133 4.8 17.7 1.0
O A:HOH863 4.8 48.1 1.0
C A:PRO281 4.9 26.4 1.0
CD A:ARG292 5.0 22.4 1.0

Reference:

K.M.Alexacou, A.C.Tenchiu Deleanu, E.D.Chrysina, M.D.Charavgi, I.D.Kostas, S.E.Zographos, N.G.Oikonomakos, D.D.Leonidas. The Binding of Beta-D-Glucopyranosyl-Thiosemicarbazone Derivatives to Glycogen Phosphorylase: A New Class of Inhibitors Bioorg.Med.Chem. V. 18 7911 2010.
ISSN: ISSN 0968-0896
PubMed: 20947361
DOI: 10.1016/J.BMC.2010.09.039
Page generated: Sat Dec 12 02:13:40 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy