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Bromine in PDB 3npa: Glycogen Phosphorylase Complexed with 2,5-Dihydroxy-4-(Beta-D- Glucopyranosyl)-Bromo-Benzene

Enzymatic activity of Glycogen Phosphorylase Complexed with 2,5-Dihydroxy-4-(Beta-D- Glucopyranosyl)-Bromo-Benzene

All present enzymatic activity of Glycogen Phosphorylase Complexed with 2,5-Dihydroxy-4-(Beta-D- Glucopyranosyl)-Bromo-Benzene:
2.4.1.1;

Protein crystallography data

The structure of Glycogen Phosphorylase Complexed with 2,5-Dihydroxy-4-(Beta-D- Glucopyranosyl)-Bromo-Benzene, PDB code: 3npa was solved by K.-M.Alexacou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.97
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 128.702, 128.702, 116.439, 90.00, 90.00, 90.00
R / Rfree (%) 19.1 / 21.3

Bromine Binding Sites:

The binding sites of Bromine atom in the Glycogen Phosphorylase Complexed with 2,5-Dihydroxy-4-(Beta-D- Glucopyranosyl)-Bromo-Benzene (pdb code 3npa). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Glycogen Phosphorylase Complexed with 2,5-Dihydroxy-4-(Beta-D- Glucopyranosyl)-Bromo-Benzene, PDB code: 3npa:

Bromine binding site 1 out of 1 in 3npa

Go back to Bromine Binding Sites List in 3npa
Bromine binding site 1 out of 1 in the Glycogen Phosphorylase Complexed with 2,5-Dihydroxy-4-(Beta-D- Glucopyranosyl)-Bromo-Benzene


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Glycogen Phosphorylase Complexed with 2,5-Dihydroxy-4-(Beta-D- Glucopyranosyl)-Bromo-Benzene within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br998

b:27.7
occ:1.00
 BR5 A:Z57998 0.0 27.7 1.0
C5 A:Z57998 1.9 23.3 1.0
C4 A:Z57998 2.8 22.8 1.0
C6 A:Z57998 2.9 22.7 1.0
O4 A:Z57998 3.0 23.3 1.0
N A:ASN284 3.7 31.3 1.0
NE2 A:HIS341 3.8 20.3 1.0
CE1 A:HIS341 3.9 19.3 1.0
CA A:ASN284 4.0 31.9 1.0
OD1 A:ASP339 4.0 16.7 0.5
O A:HOH1133 4.0 37.7 1.0
O A:HOH1087 4.1 46.1 1.0
C3 A:Z57998 4.2 23.0 1.0
C1 A:Z57998 4.2 23.4 1.0
OD2 A:ASP339 4.3 20.6 0.5
CD1 A:LEU136 4.5 21.2 1.0
N A:PHE285 4.7 32.3 1.0
C2 A:Z57998 4.7 22.0 1.0
C A:ASN284 4.8 32.2 1.0
C A:ASP283 4.9 30.5 1.0
CG A:ASP339 4.9 17.4 0.5
CG A:ASP339 5.0 18.4 0.5

Reference:

K.M.Alexacou, Y.Z.Zhang, J.P.Praly, S.E.Zographos, E.D.Chrysina, N.G.Oikonomakos, D.D.Leonidas. Halogen-Substituted (C-Beta-D-Glucopyranosyl)-Hydroquinone Regioisomers: Synthesis, Enzymatic Evaluation and Their Binding to Glycogen Phosphorylase. Bioorg.Med.Chem. V. 19 5125 2011.
ISSN: ISSN 0968-0896
PubMed: 21821421
DOI: 10.1016/J.BMC.2011.07.024
Page generated: Wed Jul 10 20:04:14 2024

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