Atomistry » Bromine » PDB 3ma6-3oji » 3ns2
Atomistry »
  Bromine »
    PDB 3ma6-3oji »
      3ns2 »

Bromine in PDB 3ns2: High-Resolution Structure of Pyrabactin-Bound PYL2

Protein crystallography data

The structure of High-Resolution Structure of Pyrabactin-Bound PYL2, PDB code: 3ns2 was solved by Q.Hao, P.Yin, C.Yan, X.Yuan, J.Wang, N.Yan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.38 / 1.63
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 62.520, 104.600, 184.300, 90.00, 90.00, 90.00
R / Rfree (%) 19.6 / 21.8

Bromine Binding Sites:

The binding sites of Bromine atom in the High-Resolution Structure of Pyrabactin-Bound PYL2 (pdb code 3ns2). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 3 binding sites of Bromine where determined in the High-Resolution Structure of Pyrabactin-Bound PYL2, PDB code: 3ns2:
Jump to Bromine binding site number: 1; 2; 3;

Bromine binding site 1 out of 3 in 3ns2

Go back to Bromine Binding Sites List in 3ns2
Bromine binding site 1 out of 3 in the High-Resolution Structure of Pyrabactin-Bound PYL2


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of High-Resolution Structure of Pyrabactin-Bound PYL2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br191

b:51.4
occ:0.62
BR A:PYV191 0.0 51.4 0.6
C1 A:PYV191 1.9 46.0 0.6
C6 A:PYV191 2.8 41.3 0.6
C2 A:PYV191 2.9 54.0 0.6
C10 A:PYV191 3.2 57.5 0.6
CE2 A:PHE165 3.3 35.6 1.0
CG2 A:VAL169 3.7 24.9 1.0
CB A:VAL169 3.7 21.5 1.0
CZ A:PHE165 3.8 30.5 1.0
CD2 A:PHE165 3.9 31.0 1.0
CG1 A:VAL169 4.0 26.4 1.0
CD1 A:LEU121 4.0 43.3 1.0
CG2 A:VAL166 4.0 25.1 1.0
C5 A:PYV191 4.2 40.2 0.6
CA A:VAL166 4.2 19.8 1.0
C3 A:PYV191 4.3 49.8 0.6
C15 A:PYV191 4.3 45.8 0.6
C14 A:PYV191 4.3 58.5 0.6
CG1 A:VAL166 4.4 20.5 1.0
CB A:VAL166 4.5 21.6 1.0
C9 A:PYV191 4.6 55.2 0.6
CE1 A:PHE165 4.7 31.2 1.0
C4 A:PYV191 4.7 48.3 0.6
O A:PHE165 4.8 23.0 1.0
CG A:PHE165 4.8 28.0 1.0
N A:VAL166 4.9 21.0 1.0
C16 A:PYV191 5.0 40.9 0.6

Bromine binding site 2 out of 3 in 3ns2

Go back to Bromine Binding Sites List in 3ns2
Bromine binding site 2 out of 3 in the High-Resolution Structure of Pyrabactin-Bound PYL2


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of High-Resolution Structure of Pyrabactin-Bound PYL2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br191

b:48.9
occ:0.68
BR B:PYV191 0.0 48.9 0.7
C1 B:PYV191 1.9 41.1 0.7
C6 B:PYV191 2.9 36.2 0.7
C2 B:PYV191 2.9 49.2 0.7
C10 B:PYV191 3.1 41.8 0.7
CE2 B:PHE165 3.2 36.2 1.0
CD2 B:PHE165 3.8 33.6 1.0
CZ B:PHE165 3.8 34.2 1.0
CG2 B:VAL169 3.8 26.5 1.0
CB B:VAL169 3.9 20.7 1.0
CA B:VAL166 4.0 19.6 1.0
CG2 B:VAL166 4.1 25.9 1.0
CG1 B:VAL169 4.1 23.9 1.0
C5 B:PYV191 4.2 38.6 0.7
C3 B:PYV191 4.3 51.5 0.7
CB B:VAL166 4.4 20.5 1.0
CG1 B:VAL166 4.4 22.7 1.0
C15 B:PYV191 4.5 49.3 0.7
C9 B:PYV191 4.5 41.7 0.7
O B:PHE165 4.7 22.8 1.0
N B:VAL166 4.7 22.3 1.0
CG B:PHE165 4.7 29.3 1.0
CE1 B:PHE165 4.7 33.4 1.0
C4 B:PYV191 4.8 47.3 0.7
C14 B:PYV191 4.8 52.1 0.7
C B:PHE165 4.9 28.8 1.0
O B:VAL166 5.0 21.5 1.0

Bromine binding site 3 out of 3 in 3ns2

Go back to Bromine Binding Sites List in 3ns2
Bromine binding site 3 out of 3 in the High-Resolution Structure of Pyrabactin-Bound PYL2


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of High-Resolution Structure of Pyrabactin-Bound PYL2 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Br191

b:43.7
occ:0.66
BR C:PYV191 0.0 43.7 0.7
C1 C:PYV191 1.9 37.4 0.7
C6 C:PYV191 2.9 31.6 0.7
C2 C:PYV191 2.9 44.1 0.7
C10 C:PYV191 3.1 48.3 0.7
CE2 C:PHE165 3.3 35.5 1.0
CG2 C:VAL169 3.7 29.5 1.0
CB C:VAL169 3.7 24.9 1.0
CD2 C:PHE165 3.9 35.9 1.0
CZ C:PHE165 3.9 30.9 1.0
CG1 C:VAL169 3.9 28.4 1.0
CG2 C:VAL166 4.1 26.3 1.0
CA C:VAL166 4.1 22.4 1.0
CD2 C:LEU121 4.1 42.9 1.0
C5 C:PYV191 4.2 39.5 0.7
C3 C:PYV191 4.3 43.2 0.7
CG1 C:VAL166 4.3 28.6 1.0
CB C:VAL166 4.4 23.8 1.0
C15 C:PYV191 4.4 40.9 0.7
C9 C:PYV191 4.5 48.2 0.7
O C:PHE165 4.6 25.8 1.0
N C:VAL166 4.7 24.3 1.0
CG C:PHE165 4.8 29.9 1.0
C4 C:PYV191 4.8 43.5 0.7
CE1 C:PHE165 4.8 32.2 1.0
C C:PHE165 4.9 29.9 1.0
C14 C:PYV191 4.9 44.7 0.7
O C:VAL166 4.9 24.4 1.0
C16 C:PYV191 5.0 41.4 0.7

Reference:

X.Yuan, P.Yin, Q.Hao, C.Yan, J.Wang, N.Yan. Single Amino Acid Alteration Between Valine and Isoleucine Determines the Distinct Pyrabactin Selectivity By PYL1 and PYL2 J.Biol.Chem. V. 285 28953 2010.
ISSN: ISSN 0021-9258
PubMed: 20630864
DOI: 10.1074/JBC.M110.160192
Page generated: Mon Jul 7 05:43:28 2025

Last articles

F in 7JTO
F in 7JOM
F in 7JT4
F in 7JRA
F in 7JR6
F in 7JPW
F in 7JPL
F in 7JPK
F in 7JL3
F in 7JN3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy