Bromine in PDB 3o8c: Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv

Enzymatic activity of Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv

All present enzymatic activity of Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv:
3.4.21.98; 3.6.1.15; 3.6.4.13;

Protein crystallography data

The structure of Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv, PDB code: 3o8c was solved by T.C.Appleby, J.R.Somoza, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	47.22 / 2.00
*Space group*	P 2₁ 2₁ 2₁
*Cell size a, b, c (Å), α, β, γ (°)*	91.699, 110.166, 142.939, 90.00, 90.00, 90.00
*R / R_free (%)*	20 / 23.2

Other elements in 3o8c:

The structure of Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

Bromine Binding Sites:

The binding sites of Bromine atom in the Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv (pdb code 3o8c). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv, PDB code: 3o8c:

Bromine binding site 1 out of 1 in 3o8c

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Bromine Binding Sites List in 3o8c

Bromine binding site 1 out of 1 in the Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv

Mono view

Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
C:Br4 b:82.6 occ:1.00	BR	C:5BU4	0.0	82.6	1.0
	C5	C:5BU4	1.9	52.5	1.0
	C6	C:5BU4	2.9	48.7	1.0
	C4	C:5BU4	3.0	51.5	1.0
	O4	C:5BU4	3.1	54.4	1.0
	OP1	C:5BU4	3.6	47.8	1.0
	O4	C:U5	3.8	52.2	1.0
	C5	C:U3	3.8	50.6	1.0
	C6	C:U3	3.8	50.9	1.0
	C4	C:U3	4.0	53.1	1.0
	N1	C:U3	4.1	47.8	1.0
	N3	C:U3	4.2	50.7	1.0
	N3	C:5BU4	4.3	49.6	1.0
	C3'	C:U3	4.3	48.2	1.0
	N1	C:5BU4	4.3	48.2	1.0
	C2	C:U3	4.3	50.1	1.0
	NZ	A:LYS371	4.3	56.5	1.0
	C2'	C:U3	4.4	51.0	1.0
	C4	C:U5	4.4	50.8	1.0
	O5'	C:5BU4	4.5	47.2	1.0
	P	C:5BU4	4.6	50.8	1.0
	O4	C:U3	4.6	52.4	1.0
	C5	C:U5	4.6	48.6	1.0
	C2	C:5BU4	4.8	49.3	1.0
	C1'	C:U3	4.8	47.8	1.0
	O3'	C:U3	5.0	47.5	1.0
	CD	A:ARG393	5.0	54.0	1.0
	O5'	C:U3	5.0	57.5	1.0

Reference:

T.C.Appleby, R.Anderson, O.Fedorova, A.M.Pyle, R.Wang, X.Liu, K.M.Brendza, J.R.Somoza. Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv. J.Mol.Biol. V. 405 1139 2011.
ISSN: ISSN 0022-2836
PubMed: 21145896
DOI: 10.1016/J.JMB.2010.11.034

Page generated: Wed Jul 10 20:06:06 2024

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