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Bromine in PDB 3ofm: Structure of A Human CK2ALPHA Prime, the Paralog Isoform of the Catalytic Subunit of Protein Kinase CK2 From Homo Sapiens

Enzymatic activity of Structure of A Human CK2ALPHA Prime, the Paralog Isoform of the Catalytic Subunit of Protein Kinase CK2 From Homo Sapiens

All present enzymatic activity of Structure of A Human CK2ALPHA Prime, the Paralog Isoform of the Catalytic Subunit of Protein Kinase CK2 From Homo Sapiens:
2.7.11.1;

Protein crystallography data

The structure of Structure of A Human CK2ALPHA Prime, the Paralog Isoform of the Catalytic Subunit of Protein Kinase CK2 From Homo Sapiens, PDB code: 3ofm was solved by N.Bischoff, B.Olsen, J.Raaf, M.Bretner, O.-G.Issinger, K.Niefind, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.03 / 2.00
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 46.690, 47.570, 50.570, 112.40, 89.49, 91.30
R / Rfree (%) 17.2 / 20.7

Other elements in 3ofm:

The structure of Structure of A Human CK2ALPHA Prime, the Paralog Isoform of the Catalytic Subunit of Protein Kinase CK2 From Homo Sapiens also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Bromine Binding Sites:

The binding sites of Bromine atom in the Structure of A Human CK2ALPHA Prime, the Paralog Isoform of the Catalytic Subunit of Protein Kinase CK2 From Homo Sapiens (pdb code 3ofm). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 4 binding sites of Bromine where determined in the Structure of A Human CK2ALPHA Prime, the Paralog Isoform of the Catalytic Subunit of Protein Kinase CK2 From Homo Sapiens, PDB code: 3ofm:
Jump to Bromine binding site number: 1; 2; 3; 4;

Bromine binding site 1 out of 4 in 3ofm

Go back to Bromine Binding Sites List in 3ofm
Bromine binding site 1 out of 4 in the Structure of A Human CK2ALPHA Prime, the Paralog Isoform of the Catalytic Subunit of Protein Kinase CK2 From Homo Sapiens


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Structure of A Human CK2ALPHA Prime, the Paralog Isoform of the Catalytic Subunit of Protein Kinase CK2 From Homo Sapiens within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br351

b:50.5
occ:1.00
 BRAB A:4B0351 0.0 50.5 1.0
CAK A:4B0351 1.9 54.7 1.0
CAL A:4B0351 2.8 47.6 1.0
CAM A:4B0351 2.9 53.6 1.0
O A:ILE117 2.9 31.5 1.0
BRAC A:4B0351 3.2 44.9 1.0
BRAD A:4B0351 3.4 87.8 1.0
O A:HOH507 3.7 55.1 1.0
N A:ILE117 3.8 30.2 1.0
C A:ILE117 3.9 31.8 1.0
SD A:MET164 4.0 36.4 1.0
CG2 A:VAL67 4.1 31.3 1.0
CAN A:4B0351 4.1 47.4 1.0
CB A:ILE117 4.2 30.0 1.0
CAO A:4B0351 4.2 54.7 1.0
CA A:ILE117 4.2 30.5 1.0
CG A:MET164 4.5 31.0 1.0
CB A:ASN119 4.5 34.9 1.0
CD1 A:TYR116 4.6 38.2 1.0
CAP A:4B0351 4.7 46.7 1.0
CE1 A:TYR116 4.7 41.5 1.0
CD1 A:LEU46 4.7 35.7 1.0
N A:ASN119 4.9 35.5 1.0
C A:TYR116 4.9 30.4 1.0

Bromine binding site 2 out of 4 in 3ofm

Go back to Bromine Binding Sites List in 3ofm
Bromine binding site 2 out of 4 in the Structure of A Human CK2ALPHA Prime, the Paralog Isoform of the Catalytic Subunit of Protein Kinase CK2 From Homo Sapiens


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Structure of A Human CK2ALPHA Prime, the Paralog Isoform of the Catalytic Subunit of Protein Kinase CK2 From Homo Sapiens within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br351

b:44.9
occ:1.00
 BRAC A:4B0351 0.0 44.9 1.0
CAL A:4B0351 1.9 47.6 1.0
CAK A:4B0351 2.9 54.7 1.0
CAN A:4B0351 2.9 47.4 1.0
O A:GLU115 3.2 25.3 1.0
BRAB A:4B0351 3.2 50.5 1.0
BRAE A:4B0351 3.4 50.9 1.0
CG2 A:VAL67 3.6 31.3 1.0
CD1 A:ILE96 3.7 24.9 1.0
CB A:VAL67 4.0 30.6 1.0
CAM A:4B0351 4.2 53.6 1.0
CAP A:4B0351 4.2 46.7 1.0
N A:ILE117 4.3 30.2 1.0
C A:GLU115 4.4 25.6 1.0
CG1 A:VAL67 4.4 32.0 1.0
CG1 A:ILE96 4.5 26.2 1.0
CB A:PHE114 4.5 23.7 1.0
CG1 A:ILE117 4.5 30.9 1.0
CA A:TYR116 4.6 28.9 1.0
CAO A:4B0351 4.7 54.7 1.0
CB A:ILE117 4.7 30.0 1.0
CG2 A:ILE175 4.7 20.1 1.0
CG A:MET164 4.7 31.0 1.0
C A:TYR116 4.8 30.4 1.0
N A:TYR116 5.0 26.6 1.0

Bromine binding site 3 out of 4 in 3ofm

Go back to Bromine Binding Sites List in 3ofm
Bromine binding site 3 out of 4 in the Structure of A Human CK2ALPHA Prime, the Paralog Isoform of the Catalytic Subunit of Protein Kinase CK2 From Homo Sapiens


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Structure of A Human CK2ALPHA Prime, the Paralog Isoform of the Catalytic Subunit of Protein Kinase CK2 From Homo Sapiens within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br351

b:87.8
occ:1.00
 BRAD A:4B0351 0.0 87.8 1.0
CAM A:4B0351 1.9 53.6 1.0
CAO A:4B0351 2.9 54.7 1.0
CAK A:4B0351 2.9 54.7 1.0
BRAB A:4B0351 3.4 50.5 1.0
NAI A:4B0351 3.4 48.2 1.0
SD A:MET164 3.8 36.4 1.0
O A:HOH507 4.0 55.1 1.0
CD1 A:LEU46 4.1 35.7 1.0
CAP A:4B0351 4.2 46.7 1.0
CAL A:4B0351 4.2 47.6 1.0
CB A:LEU46 4.3 36.4 1.0
CB A:ASN119 4.5 34.9 1.0
ND2 A:ASN119 4.5 35.2 1.0
O A:HOH527 4.6 50.1 1.0
CG A:LEU46 4.6 35.5 1.0
NAJ A:4B0351 4.6 49.0 1.0
CD2 A:LEU46 4.6 32.0 1.0
CAN A:4B0351 4.7 47.4 1.0
CE A:MET164 4.9 30.5 1.0
CG A:ASN119 4.9 35.8 1.0

Bromine binding site 4 out of 4 in 3ofm

Go back to Bromine Binding Sites List in 3ofm
Bromine binding site 4 out of 4 in the Structure of A Human CK2ALPHA Prime, the Paralog Isoform of the Catalytic Subunit of Protein Kinase CK2 From Homo Sapiens


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Structure of A Human CK2ALPHA Prime, the Paralog Isoform of the Catalytic Subunit of Protein Kinase CK2 From Homo Sapiens within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br351

b:50.9
occ:1.00
 BRAE A:4B0351 0.0 50.9 1.0
CAN A:4B0351 1.9 47.4 1.0
CAG A:4B0351 2.7 43.7 1.0
CAP A:4B0351 2.8 46.7 1.0
CAL A:4B0351 2.9 47.6 1.0
CAH A:4B0351 3.2 47.0 1.0
OAA A:4B0351 3.3 18.3 1.0
CAF A:4B0351 3.3 36.4 1.0
NAQ A:4B0351 3.3 47.1 1.0
BRAC A:4B0351 3.4 44.9 1.0
CD2 A:PHE114 3.8 22.6 1.0
CAO A:4B0351 4.1 54.7 1.0
CG A:PHE114 4.2 22.5 1.0
CAK A:4B0351 4.2 54.7 1.0
CB A:ILE175 4.2 21.4 1.0
CD1 A:ILE175 4.2 23.5 1.0
CG2 A:ILE175 4.2 20.1 1.0
CG1 A:VAL67 4.3 32.0 1.0
CE2 A:PHE114 4.3 22.5 1.0
CB A:PHE114 4.4 23.7 1.0
NAJ A:4B0351 4.6 49.0 1.0
CAM A:4B0351 4.7 53.6 1.0
CG1 A:ILE96 4.7 26.2 1.0
CB A:VAL67 4.8 30.6 1.0
CG1 A:ILE175 4.8 21.5 1.0
CD1 A:PHE114 4.9 25.2 1.0
NAI A:4B0351 5.0 48.2 1.0

Reference:

N.Bischoff, B.Olsen, J.Raaf, M.Bretner, O.G.Issinger, K.Niefind. Structural Basis of the Reduced Affinity Between the Protein Kinase CK2 Subunits CK2ALPHA Prime and CK2BETA J.Mol.Biol. V. 407 1 2011.
ISSN: ISSN 0022-2836
PubMed: 21241709
DOI: 10.1016/J.JMB.2011.01.020
Page generated: Wed Jul 10 20:06:25 2024

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