Bromine in PDB 3oh9: Alka Undamaged Dna Complex: Interrogation of A T:A Base Pair

All present enzymatic activity of Alka Undamaged Dna Complex: Interrogation of A T:A Base Pair:
3.2.2.21;

The structure of Alka Undamaged Dna Complex: Interrogation of A T:A Base Pair, PDB code: 3oh9 was solved by B.R.Bowman, S.Lee, S.Wang, G.L.Verdine, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.38 / 2.80
Space group	I 41 2 2
Cell size a, b, c (Å), α, β, γ (°)	139.900, 139.900, 91.100, 90.00, 90.00, 90.00
R / Rfree (%)	20.5 / 25.7

The binding sites of Bromine atom in the Alka Undamaged Dna Complex: Interrogation of A T:A Base Pair (pdb code 3oh9). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Alka Undamaged Dna Complex: Interrogation of A T:A Base Pair, PDB code: 3oh9:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in the Alka Undamaged Dna Complex: Interrogation of A T:A Base Pair


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Alka Undamaged Dna Complex: Interrogation of A T:A Base Pair within 5.0Å range: probe atom residue distance (Å) B Occ C:Br5 b:0.1 occ:1.00 BR C:BRU5 0.0 0.1 1.0 C5 C:BRU5 1.9 0.5 1.0 C6 C:BRU5 2.8 0.2 1.0 C4 C:BRU5 2.9 0.7 1.0 O4 C:BRU5 3.1 0.8 1.0 C2' C:DA4 3.4 0.0 1.0 C8 C:DA4 3.8 0.5 1.0 N9 C:DA4 3.9 0.3 1.0 N1 C:BRU5 4.1 0.8 1.0 N3 C:BRU5 4.2 0.1 1.0 N7 C:DA4 4.2 0.8 1.0 C1' C:DA4 4.2 0.2 1.0 C4 C:DA4 4.4 0.3 1.0 C5 C:DA4 4.5 0.9 1.0 C2 C:BRU5 4.7 0.5 1.0 C3' C:DA4 4.7 0.8 1.0 OP2 C:BRU5 4.7 0.4 1.0 N7 C:DG6 4.9 0.4 1.0

Bromine binding site 2 out of 2 in the Alka Undamaged Dna Complex: Interrogation of A T:A Base Pair


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Alka Undamaged Dna Complex: Interrogation of A T:A Base Pair within 5.0Å range: probe atom residue distance (Å) B Occ C:Br9 b:0.9 occ:1.00 BR C:BRU9 0.0 0.9 1.0 C5 C:BRU9 1.9 0.8 1.0 C6 C:BRU9 2.9 0.2 1.0 C4 C:BRU9 2.9 0.4 1.0 O4 C:BRU9 3.0 0.3 1.0 C2' C:DA8 3.9 0.3 1.0 N3 C:BRU9 4.2 0.2 1.0 N1 C:BRU9 4.2 0.1 1.0 C8 C:DA8 4.3 0.4 1.0 N9 C:DA8 4.5 0.0 1.0 C2 C:BRU9 4.7 0.7 1.0 N7 C:DA8 4.7 0.6 1.0 C1' C:DA8 4.8 0.6 1.0

B.R.Bowman, S.Lee, S.Wang, G.L.Verdine. Structure of Escherichia Coli Alka in Complex with Undamaged Dna. J.Biol.Chem. V. 285 35783 2010.
ISSN: ISSN 0021-9258
PubMed: 20843803
DOI: 10.1074/JBC.M110.155663