Bromine in PDB 3td0: Crystal Structure of the Bacterial A1408G-Mutant and the Protozoa Cytoplasmic Ribosomal Decoding Site

The structure of Crystal Structure of the Bacterial A1408G-Mutant and the Protozoa Cytoplasmic Ribosomal Decoding Site, PDB code: 3td0 was solved by J.Kondo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.70 / 1.60
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	45.520, 46.730, 55.290, 90.00, 90.00, 90.00
R / Rfree (%)	22 / 25.6

The structure of Crystal Structure of the Bacterial A1408G-Mutant and the Protozoa Cytoplasmic Ribosomal Decoding Site also contains other interesting chemical elements:

Magnesium

(Mg)

7 atoms

The binding sites of Bromine atom in the Crystal Structure of the Bacterial A1408G-Mutant and the Protozoa Cytoplasmic Ribosomal Decoding Site (pdb code 3td0). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Crystal Structure of the Bacterial A1408G-Mutant and the Protozoa Cytoplasmic Ribosomal Decoding Site, PDB code: 3td0:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in the Crystal Structure of the Bacterial A1408G-Mutant and the Protozoa Cytoplasmic Ribosomal Decoding Site


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of the Bacterial A1408G-Mutant and the Protozoa Cytoplasmic Ribosomal Decoding Site within 5.0Å range: probe atom residue distance (Å) B Occ A:Br11 b:18.2 occ:1.00 BR A:5BU11 0.0 18.2 1.0 C5 A:5BU11 1.9 14.7 1.0 C6 A:5BU11 2.8 14.0 1.0 C4 A:5BU11 2.9 13.2 1.0 O4 A:5BU11 3.1 13.8 1.0 O A:HOH109 3.3 22.0 1.0 O A:HOH106 3.5 17.9 1.0 O A:HOH157 3.5 25.6 1.0 N7 A:G10 3.6 14.4 1.0 C5 A:G10 3.6 12.9 1.0 C8 A:G10 3.6 14.5 1.0 O A:HOH104 3.6 15.0 1.0 OP2 A:5BU11 3.7 14.0 1.0 C4 A:G10 3.7 13.5 1.0 N9 A:G10 3.7 14.2 1.0 O A:HOH4002 3.8 26.0 1.0 C3' A:G10 3.9 14.9 1.0 N1 A:5BU11 4.1 12.3 1.0 N3 A:5BU11 4.1 13.9 1.0 C2' A:G10 4.1 13.7 1.0 O B:HOH4003 4.1 26.3 1.0 O A:HOH4006 4.2 27.4 1.0 C6 A:G10 4.3 13.6 1.0 O5' A:5BU11 4.3 15.0 1.0 N3 A:G10 4.4 12.5 1.0 C1' A:G10 4.5 14.4 1.0 P A:5BU11 4.5 14.4 1.0 N4 A:C12 4.5 13.5 1.0 O A:HOH122 4.5 24.3 1.0 C2 A:5BU11 4.7 13.3 1.0 O3' A:G10 4.7 14.8 1.0 C5 A:C12 4.8 11.7 1.0 N1 A:G10 4.8 11.8 1.0 C2 A:G10 4.8 12.5 1.0 MG B:MG4000 4.8 27.3 1.0 O5' A:G10 4.9 26.3 1.0 O6 A:G10 4.9 14.7 1.0

Bromine binding site 2 out of 2 in the Crystal Structure of the Bacterial A1408G-Mutant and the Protozoa Cytoplasmic Ribosomal Decoding Site


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of the Bacterial A1408G-Mutant and the Protozoa Cytoplasmic Ribosomal Decoding Site within 5.0Å range: probe atom residue distance (Å) B Occ B:Br34 b:20.8 occ:1.00 BR B:5BU34 0.0 20.8 1.0 C5 B:5BU34 1.9 18.6 1.0 C6 B:5BU34 2.8 16.6 1.0 C4 B:5BU34 2.8 15.9 1.0 O4 B:5BU34 3.1 16.8 1.0 O B:HOH4005 3.3 26.4 1.0 C8 B:G33 3.6 16.3 1.0 N7 B:G33 3.6 14.6 1.0 OP2 B:5BU34 3.6 19.6 1.0 O B:HOH110 3.7 23.1 1.0 C5 B:G33 3.7 15.6 1.0 N9 B:G33 3.8 16.4 1.0 C4 B:G33 3.9 16.5 1.0 O B:HOH3002 4.0 26.4 1.0 O B:HOH4001 4.1 22.7 1.0 O B:HOH176 4.1 44.8 1.0 C3' B:G33 4.1 19.7 1.0 N3 B:5BU34 4.1 16.6 1.0 N1 B:5BU34 4.1 18.8 1.0 C2' B:G33 4.2 18.6 1.0 O B:HOH4003 4.2 26.3 1.0 N4 B:C35 4.3 15.0 1.0 O5' B:5BU34 4.4 20.5 1.0 O B:HOH135 4.4 29.7 1.0 C6 B:G33 4.5 15.7 1.0 P B:5BU34 4.5 20.4 1.0 C1' B:G33 4.5 17.1 1.0 C5 B:C35 4.6 15.2 1.0 MG B:MG4000 4.6 27.3 1.0 N3 B:G33 4.6 15.6 1.0 C2 B:5BU34 4.7 17.4 1.0 C4 B:C35 4.8 15.8 1.0 O3' B:G33 4.8 21.0 1.0 O5' B:G33 4.9 17.7 1.0

J.Kondo, J.Kondo. N/A N/A.
ISSN: ISSN 1433-7851
PubMed: 22110016
DOI: 10.1002/ANIE.201106084