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Bromine in PDB 3udp: Crystal Structure of Bace with Compound 12

Enzymatic activity of Crystal Structure of Bace with Compound 12

All present enzymatic activity of Crystal Structure of Bace with Compound 12:
3.4.23.46;

Protein crystallography data

The structure of Crystal Structure of Bace with Compound 12, PDB code: 3udp was solved by I.V.Efremov, F.F.Vajdos, K.Borzilleri, S.Capetta, P.Dorff, J.Dutra, M.Mansour, C.Oborski, T.O'connell, T.J.O'sullivan, J.Pandit, H.Wang, J.Withka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.75 / 1.95
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 74.504, 103.865, 98.462, 90.00, 90.00, 90.00
R / Rfree (%) 20.1 / 27.5

Other elements in 3udp:

The structure of Crystal Structure of Bace with Compound 12 also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Bromine Binding Sites:

The binding sites of Bromine atom in the Crystal Structure of Bace with Compound 12 (pdb code 3udp). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Crystal Structure of Bace with Compound 12, PDB code: 3udp:

Bromine binding site 1 out of 1 in 3udp

Go back to Bromine Binding Sites List in 3udp
Bromine binding site 1 out of 1 in the Crystal Structure of Bace with Compound 12


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of Bace with Compound 12 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br501

b:34.0
occ:1.00
BR2 A:09D501 0.0 34.0 1.0
C12 A:09D501 1.9 29.8 1.0
C7 A:09D501 2.8 31.1 1.0
C6 A:09D501 2.9 31.4 1.0
O A:HOH635 3.2 27.0 1.0
O A:ILE126 3.4 24.1 1.0
NH1 A:ARG128 3.9 44.7 1.0
CB A:SER35 4.1 23.1 1.0
C9 A:09D501 4.1 31.2 1.0
C5 A:09D501 4.1 30.3 1.0
CZ A:ARG128 4.2 44.6 1.0
CD1 A:ILE126 4.2 22.4 1.0
NH2 A:ARG128 4.3 47.9 1.0
CB A:ILE126 4.3 25.5 1.0
CA A:SER35 4.3 22.1 1.0
CE1 A:TYR71 4.3 31.1 1.0
CG1 A:ILE126 4.5 27.2 1.0
CG1 A:VAL69 4.5 36.2 1.0
O A:GLY34 4.5 23.7 1.0
C A:ILE126 4.5 25.6 1.0
C11 A:09D501 4.7 34.5 1.0
CD1 A:TYR71 4.9 33.1 1.0
NE A:ARG128 4.9 44.4 1.0
N A:SER36 5.0 24.4 1.0

Reference:

I.V.Efremov, F.F.Vajdos, K.A.Borzilleri, S.Capetta, H.Chen, P.H.Dorff, J.K.Dutra, S.W.Goldstein, M.Mansour, A.Mccoll, S.Noell, C.E.Oborski, T.N.O'connell, T.J.O'sullivan, J.Pandit, H.Wang, B.Wei, J.M.Withka. Discovery and Optimization of A Novel Spiropyrrolidine Inhibitor of {Beta}-Secretase (BACE1) Through Fragment-Based Drug Design. J.Med.Chem. V. 55 9069 2012.
ISSN: ISSN 0022-2623
PubMed: 22468999
DOI: 10.1021/JM201715D
Page generated: Sat Dec 12 02:16:16 2020

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