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Bromine in PDB 3udq: Crystal Structure of Bace with Compound 13

Enzymatic activity of Crystal Structure of Bace with Compound 13

All present enzymatic activity of Crystal Structure of Bace with Compound 13:
3.4.23.46;

Protein crystallography data

The structure of Crystal Structure of Bace with Compound 13, PDB code: 3udq was solved by I.V.Efremov, F.F.Vajdos, K.Borzilleri, S.Capetta, P.Dorff, J.Dutra, M.Mansour, C.Oborski, T.O'connell, T.J.O'sullivan, J.Pandit, H.Wang, J.Withka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 51.91 / 2.73
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 74.467, 103.824, 100.052, 90.00, 90.00, 90.00
R / Rfree (%) 15.5 / 24.4

Bromine Binding Sites:

The binding sites of Bromine atom in the Crystal Structure of Bace with Compound 13 (pdb code 3udq). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Crystal Structure of Bace with Compound 13, PDB code: 3udq:

Bromine binding site 1 out of 1 in 3udq

Go back to Bromine Binding Sites List in 3udq
Bromine binding site 1 out of 1 in the Crystal Structure of Bace with Compound 13


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of Bace with Compound 13 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br4000

b:48.9
occ:1.00
BR1 A:09E4000 0.0 48.9 1.0
C19 A:09E4000 1.9 46.4 1.0
C18 A:09E4000 2.8 45.0 1.0
C20 A:09E4000 2.9 47.0 1.0
O A:ILE126 3.2 35.0 1.0
O A:HOH476 4.0 29.3 1.0
C17 A:09E4000 4.2 45.6 1.0
CA A:SER35 4.2 20.7 1.0
C21 A:09E4000 4.2 47.6 1.0
CB A:SER35 4.2 23.7 1.0
CE1 A:TYR71 4.3 38.9 1.0
C A:ILE126 4.3 34.5 1.0
CB A:ILE126 4.3 33.1 1.0
CD1 A:ILE126 4.4 35.4 1.0
NE A:ARG128 4.5 66.5 1.0
O A:GLY34 4.6 23.0 1.0
CG1 A:VAL69 4.6 45.9 1.0
CG1 A:ILE126 4.6 32.2 1.0
CG A:ARG128 4.7 37.3 1.0
N A:SER36 4.7 19.6 1.0
C16 A:09E4000 4.7 47.5 1.0
NH1 A:ARG128 4.8 84.8 1.0
CZ A:ARG128 4.8 92.2 1.0
CA A:ILE126 4.9 30.8 1.0
CD1 A:TYR71 4.9 39.2 1.0

Reference:

I.V.Efremov, F.F.Vajdos, K.A.Borzilleri, S.Capetta, H.Chen, P.H.Dorff, J.K.Dutra, S.W.Goldstein, M.Mansour, A.Mccoll, S.Noell, C.E.Oborski, T.N.O'connell, T.J.O'sullivan, J.Pandit, H.Wang, B.Wei, J.M.Withka. Discovery and Optimization of A Novel Spiropyrrolidine Inhibitor of {Beta}-Secretase (BACE1) Through Fragment-Based Drug Design. J.Med.Chem. V. 55 9069 2012.
ISSN: ISSN 0022-2623
PubMed: 22468999
DOI: 10.1021/JM201715D
Page generated: Sat Dec 12 02:16:17 2020

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