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Bromine in PDB 4bae: Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis

Enzymatic activity of Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis

All present enzymatic activity of Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis:
5.99.1.3;

Protein crystallography data

The structure of Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis, PDB code: 4bae was solved by J.A.Read, H.G.Gingell, P.Madhavapeddi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 59.19 / 2.35
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 59.191, 78.249, 89.750, 90.00, 90.01, 90.00
R / Rfree (%) 19.42 / 23.72

Other elements in 4bae:

The structure of Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms
Calcium (Ca) 4 atoms

Bromine Binding Sites:

The binding sites of Bromine atom in the Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis (pdb code 4bae). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 4 binding sites of Bromine where determined in the Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis, PDB code: 4bae:
Jump to Bromine binding site number: 1; 2; 3; 4;

Bromine binding site 1 out of 4 in 4bae

Go back to Bromine Binding Sites List in 4bae
Bromine binding site 1 out of 4 in the Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1256

b:71.0
occ:1.00
BR3 A:RWX1256 0.0 71.0 1.0
C4 A:RWX1256 1.9 59.3 1.0
C3 A:RWX1256 2.9 54.5 1.0
C5 A:RWX1256 3.0 54.0 1.0
N9 A:RWX1256 3.3 60.2 1.0
CL3 A:RWX1256 3.5 50.7 1.0
C7 A:RWX1256 3.6 57.0 1.0
CG2 A:VAL125 3.7 55.4 1.0
CD1 A:ILE84 3.7 68.8 1.0
CB A:ASN52 3.7 49.4 1.0
CG1 A:VAL123 3.8 69.7 1.0
CG A:ASN52 3.9 62.2 1.0
CG1 A:ILE84 4.0 66.8 1.0
N6 A:RWX1256 4.1 51.6 1.0
C17 A:RWX1256 4.1 69.3 1.0
C2 A:RWX1256 4.1 51.7 1.0
CG2 A:VAL123 4.1 72.7 1.0
OD1 A:ASN52 4.2 56.6 1.0
ND2 A:ASN52 4.3 51.4 1.0
CG1 A:VAL99 4.4 66.3 1.0
C10 A:RWX1256 4.5 64.7 1.0
O16 A:RWX1256 4.5 71.5 1.0
CB A:VAL123 4.6 71.9 1.0
C15 A:RWX1256 4.7 69.5 1.0
O8 A:RWX1256 4.8 59.4 1.0

Bromine binding site 2 out of 4 in 4bae

Go back to Bromine Binding Sites List in 4bae
Bromine binding site 2 out of 4 in the Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br1255

b:65.5
occ:1.00
BR3 B:RWX1255 0.0 65.5 1.0
C4 B:RWX1255 1.9 52.9 1.0
C3 B:RWX1255 2.9 47.6 1.0
C5 B:RWX1255 3.0 48.2 1.0
CL3 B:RWX1255 3.4 43.8 1.0
N9 B:RWX1255 3.4 53.3 1.0
CD1 B:ILE84 3.6 56.8 1.0
C7 B:RWX1255 3.7 48.6 1.0
CG1 B:VAL123 3.7 57.9 1.0
CB B:ASN52 3.8 44.5 1.0
CG1 B:ILE84 3.9 57.9 1.0
CG B:ASN52 4.0 64.5 1.0
N6 B:RWX1255 4.1 48.3 1.0
C2 B:RWX1255 4.1 46.7 1.0
CG1 B:VAL125 4.2 49.0 1.0
C17 B:RWX1255 4.3 67.3 1.0
ND2 B:ASN52 4.3 46.1 1.0
OD1 B:ASN52 4.4 59.2 1.0
CG1 B:VAL99 4.4 64.4 1.0
O16 B:RWX1255 4.4 67.8 1.0
C10 B:RWX1255 4.6 58.2 1.0
CG2 B:VAL123 4.8 61.8 1.0
C15 B:RWX1255 4.8 63.3 1.0
CB B:VAL125 4.9 48.0 1.0
O8 B:RWX1255 4.9 49.3 1.0
CB B:VAL123 4.9 60.0 1.0

Bromine binding site 3 out of 4 in 4bae

Go back to Bromine Binding Sites List in 4bae
Bromine binding site 3 out of 4 in the Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Br1256

b:61.4
occ:1.00
BR3 C:RWX1256 0.0 61.4 1.0
C4 C:RWX1256 1.9 49.5 1.0
C3 C:RWX1256 2.9 44.7 1.0
C5 C:RWX1256 3.0 43.2 1.0
CL3 C:RWX1256 3.3 40.5 1.0
N9 C:RWX1256 3.4 53.4 1.0
CD1 C:ILE84 3.6 59.9 1.0
C7 C:RWX1256 3.7 48.0 1.0
C17 C:RWX1256 3.8 63.2 1.0
CB C:ASN52 3.8 40.9 1.0
CG1 C:ILE84 3.8 56.3 1.0
CG1 C:VAL123 4.0 66.3 1.0
CG C:ASN52 4.1 62.6 1.0
C2 C:RWX1256 4.1 39.2 1.0
N6 C:RWX1256 4.1 39.5 1.0
CG1 C:VAL125 4.3 48.4 1.0
O C:HOH2010 4.4 33.8 1.0
CG1 C:VAL99 4.4 65.5 1.0
CG2 C:VAL123 4.4 69.8 1.0
ND2 C:ASN52 4.4 53.4 1.0
OD1 C:ASN52 4.4 65.1 1.0
O16 C:RWX1256 4.5 63.5 1.0
C10 C:RWX1256 4.6 55.6 1.0
C15 C:RWX1256 4.7 59.6 1.0
CB C:VAL123 4.9 68.8 1.0
O8 C:RWX1256 4.9 48.9 1.0

Bromine binding site 4 out of 4 in 4bae

Go back to Bromine Binding Sites List in 4bae
Bromine binding site 4 out of 4 in the Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Optimisation of Pyrroleamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Br1257

b:60.4
occ:1.00
BR3 D:RWX1257 0.0 60.4 1.0
C4 D:RWX1257 1.9 44.5 1.0
C3 D:RWX1257 2.9 39.5 1.0
C5 D:RWX1257 3.0 38.8 1.0
N9 D:RWX1257 3.4 45.5 1.0
CL3 D:RWX1257 3.4 33.8 1.0
CD1 D:ILE84 3.6 50.1 1.0
C7 D:RWX1257 3.7 42.5 1.0
C17 D:RWX1257 3.7 64.6 1.0
CB D:ASN52 3.8 34.9 1.0
CG1 D:ILE84 3.8 53.8 1.0
CG D:ASN52 4.0 58.0 1.0
CG1 D:VAL123 4.1 59.0 1.0
C2 D:RWX1257 4.1 36.4 1.0
N6 D:RWX1257 4.1 34.9 1.0
O16 D:RWX1257 4.3 63.2 1.0
CG1 D:VAL99 4.4 60.3 1.0
O D:HOH2003 4.4 46.7 1.0
CG1 D:VAL125 4.4 44.8 1.0
ND2 D:ASN52 4.4 48.4 1.0
OD1 D:ASN52 4.4 50.9 1.0
CG2 D:VAL123 4.4 61.9 1.0
C10 D:RWX1257 4.6 49.6 1.0
C15 D:RWX1257 4.7 56.0 1.0
O8 D:RWX1257 4.9 44.9 1.0
CB D:VAL125 4.9 44.1 1.0
CB D:VAL123 4.9 61.4 1.0

Reference:

S.P.Hameed, S.Solapure, K.Mukherjee, V.Nandi, D.Waterson, R.Shandil, M.Balganesh, V.K.Sambandamurthy, A.K.Raichurkar, A.Deshpande, A.Ghosh, D.Awasthy, G.Shanbhag, G.Sheikh, H.Mcmiken, J.Puttur, J.Reddy, J.Werngren, J.Read, M.Kumar, M.R, M.Chinnapattu, P.Madhavapeddi, P.Manjrekar, R.Basu, S.Gaonkar, S.Sharma, S.Hoffner, V.Humnabadkar, V.Subbulakshmi, V.Panduga. Optimization of Pyrrolamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis. Antimicrob.Agents Chemother. V. 58 61 2014.
ISSN: ISSN 0066-4804
PubMed: 24126580
DOI: 10.1128/AAC.01751-13
Page generated: Sat Dec 12 02:18:17 2020

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