Atomistry » Bromine » PDB 4alu-4d45 » 4bna
Atomistry »
  Bromine »
    PDB 4alu-4d45 »
      4bna »

Bromine in PDB 4bna: Reversible Bending and Helix Geometry in A B-Dna Dodecamer: Cgcgaattbrcgcg

Protein crystallography data

The structure of Reversible Bending and Helix Geometry in A B-Dna Dodecamer: Cgcgaattbrcgcg, PDB code: 4bna was solved by M.L.Kopka, A.V.Fratini, R.E.Dickerson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 24.200, 40.090, 63.950, 90.00, 90.00, 90.00
R / Rfree (%) 21.6 / n/a

Bromine Binding Sites:

The binding sites of Bromine atom in the Reversible Bending and Helix Geometry in A B-Dna Dodecamer: Cgcgaattbrcgcg (pdb code 4bna). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Reversible Bending and Helix Geometry in A B-Dna Dodecamer: Cgcgaattbrcgcg, PDB code: 4bna:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in 4bna

Go back to Bromine Binding Sites List in 4bna
Bromine binding site 1 out of 2 in the Reversible Bending and Helix Geometry in A B-Dna Dodecamer: Cgcgaattbrcgcg


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Reversible Bending and Helix Geometry in A B-Dna Dodecamer: Cgcgaattbrcgcg within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br9

b:27.8
occ:1.00
BR A:CBR9 0.0 27.8 1.0
C5 A:CBR9 1.9 3.8 1.0
C6 A:CBR9 2.9 1.9 1.0
C4 A:CBR9 2.9 18.3 1.0
N4 A:CBR9 3.1 11.4 1.0
C2' A:DT8 3.6 11.9 1.0
N1 A:DT8 3.9 13.6 1.0
C6 A:DT8 3.9 6.9 1.0
O A:HOH81 4.0 42.8 1.0
N1 A:CBR9 4.1 25.1 1.0
N3 A:CBR9 4.1 11.8 1.0
O A:HOH93 4.2 32.8 1.0
C2 A:DT8 4.3 12.9 1.0
C1' A:DT8 4.3 18.3 1.0
C5 A:DT8 4.3 1.5 1.0
O6 A:DG10 4.4 10.5 1.0
C2 A:CBR9 4.6 23.5 1.0
N3 A:DT8 4.7 6.4 1.0
OP2 A:CBR9 4.8 36.3 1.0
C4 A:DT8 4.8 10.3 1.0
N7 A:DG10 4.8 12.8 1.0
O2 A:DT8 4.9 26.3 1.0
C3' A:DT8 4.9 42.8 1.0

Bromine binding site 2 out of 2 in 4bna

Go back to Bromine Binding Sites List in 4bna
Bromine binding site 2 out of 2 in the Reversible Bending and Helix Geometry in A B-Dna Dodecamer: Cgcgaattbrcgcg


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Reversible Bending and Helix Geometry in A B-Dna Dodecamer: Cgcgaattbrcgcg within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br21

b:22.2
occ:1.00
BR B:CBR21 0.0 22.2 1.0
C5 B:CBR21 1.9 22.4 1.0
C4 B:CBR21 2.9 -7.0 1.0
C6 B:CBR21 2.9 26.1 1.0
O B:HOH129 2.9 33.1 1.0
N4 B:CBR21 3.0 -1.4 1.0
C6 B:DT20 3.7 -8.3 1.0
C5 B:DT20 3.8 11.0 1.0
O A:HOH88 3.9 32.1 1.0
N1 B:DT20 3.9 0.6 1.0
C2' B:DT20 4.0 10.1 1.0
O B:HOH104 4.1 31.9 1.0
N3 B:CBR21 4.1 18.9 1.0
N1 B:CBR21 4.1 3.3 1.0
O A:HOH60 4.2 31.3 1.0
C4 B:DT20 4.2 1.3 1.0
C2 B:DT20 4.3 6.2 1.0
O B:HOH33 4.3 40.9 1.0
C7 B:DT20 4.4 4.5 1.0
N3 B:DT20 4.4 12.8 1.0
C1' B:DT20 4.6 4.3 1.0
O6 B:DG22 4.6 9.3 1.0
C2 B:CBR21 4.6 42.7 1.0
N7 B:DG22 4.8 19.0 1.0
O4 B:DT20 4.9 24.8 1.0
O2 B:DT20 5.0 14.0 1.0

Reference:

A.V.Fratini, M.L.Kopka, H.R.Drew, R.E.Dickerson. Reversible Bending and Helix Geometry in A B-Dna Dodecamer: Cgcgaattbrcgcg. J.Biol.Chem. V. 257 14686 1982.
ISSN: ISSN 0021-9258
PubMed: 7174662
Page generated: Sat Dec 12 02:18:21 2020

Last articles

Tb in 6TVY
Si in 6Y7O
Rh in 6WRM
Rh in 6WRL
Ni in 6Y8Z
Ni in 6Y8Y
Na in 6ZXZ
Na in 7ACG
Na in 6YLS
Na in 6Y8Z
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy