Bromine in PDB 4da8: Crystal Structure of the Hexameric Purine Nucleoside Phosphorylase From Bacillus Subtilis in Complex with 8-Bromoguanosine

Enzymatic activity of Crystal Structure of the Hexameric Purine Nucleoside Phosphorylase From Bacillus Subtilis in Complex with 8-Bromoguanosine

All present enzymatic activity of Crystal Structure of the Hexameric Purine Nucleoside Phosphorylase From Bacillus Subtilis in Complex with 8-Bromoguanosine:
2.4.2.1;

Protein crystallography data

The structure of Crystal Structure of the Hexameric Purine Nucleoside Phosphorylase From Bacillus Subtilis in Complex with 8-Bromoguanosine, PDB code: 4da8 was solved by N.H.Martins, P.O.Giuseppe, A.N.Meza, M.T.Murakami, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	44.44 / 2.60
*Space group*	P 6₃ 2 2
*Cell size a, b, c (Å), α, β, γ (°)*	135.752, 135.752, 57.384, 90.00, 90.00, 120.00
*R / R_free (%)*	20.3 / 26

Bromine Binding Sites:

The binding sites of Bromine atom in the Crystal Structure of the Hexameric Purine Nucleoside Phosphorylase From Bacillus Subtilis in Complex with 8-Bromoguanosine (pdb code 4da8). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Crystal Structure of the Hexameric Purine Nucleoside Phosphorylase From Bacillus Subtilis in Complex with 8-Bromoguanosine, PDB code: 4da8:

Bromine binding site 1 out of 1 in 4da8

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Bromine Binding Sites List in 4da8

Bromine binding site 1 out of 1 in the Crystal Structure of the Hexameric Purine Nucleoside Phosphorylase From Bacillus Subtilis in Complex with 8-Bromoguanosine

Mono view

Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of the Hexameric Purine Nucleoside Phosphorylase From Bacillus Subtilis in Complex with 8-Bromoguanosine within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Br301 b:64.5 occ:0.80	BR	A:BG2301	0.0	64.5	0.8
	C8	A:BG2301	2.0	54.7	0.8
	N7	A:BG2301	2.9	55.0	0.8
	N9	A:BG2301	2.9	50.4	0.8
	OG	A:SER90	2.9	43.9	1.0
	C1'	A:BG2301	3.2	43.9	0.8
	O4'	A:BG2301	3.2	43.0	0.8
	OG	A:SER202	3.5	52.7	1.0
	CB	A:SER202	3.7	52.1	1.0
	C	A:SER90	3.8	43.5	1.0
	O	A:SER90	3.9	43.6	1.0
	N	A:CYS91	3.9	43.5	1.0
	C5	A:BG2301	4.0	52.0	0.8
	CB	A:SER90	4.0	44.0	1.0
	C4	A:BG2301	4.0	50.7	0.8
	CA	A:SER90	4.3	43.4	1.0
	CA	A:CYS91	4.4	43.7	1.0
	O5'	A:BG2301	4.6	43.1	0.8
	N	A:SER90	4.6	42.4	1.0
	C4'	A:BG2301	4.7	40.9	0.8
	C2'	A:BG2301	4.7	40.0	0.8
	C	A:CYS91	4.7	43.5	1.0
	O	A:HOH413	4.9	26.6	1.0
	O	A:CYS91	5.0	44.2	1.0

Reference:

P.O.De Giuseppe, N.H.Martins, A.N.Meza, C.R.Dos Santos, H.D.Pereira, M.T.Murakami. Insights Into Phosphate Cooperativity and Influence of Substrate Modifications on Binding and Catalysis of Hexameric Purine Nucleoside Phosphorylases. Plos One V. 7 44282 2012.
ISSN: ESSN 1932-6203
PubMed: 22957058
DOI: 10.1371/JOURNAL.PONE.0044282

Page generated: Sat Dec 12 02:18:58 2020

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