Chemical elements
  Bromine
    Isotopes
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    Production
    Application
    PDB 101d-1f5m
    PDB 1f6j-1kdh
    PDB 1kfo-1o3l
    PDB 1o5m-1to3
    PDB 1uhj-1zpz
    PDB 1zw9-2fkk
    PDB 2fpr-2j9m
    PDB 2ja5-2qfe
    PDB 2qgd-2wb9
    PDB 2wbb-3biy
    PDB 3bm9-3eki
    PDB 3en9-3hvo
    PDB 3hzw-3lbz
    PDB 3ld5-3ot3
    PDB 3oyp-4de3
    PDB 4dey-9est
      4dey
      4dma
      4dmn
      4er6
      4er7
      4err
      4f63
      4f64
      4f65
      4fbs
      4ft7
      4fuf
      4g55
      4std
      5rhn
      6bna
      6cox
      6std
      9est

Bromine in the structure of Hiv-1 Integrase Catalytical Core Domain (pdb 4dmn)






The binding sites of Bromine atom in the structure of Hiv-1 Integrase Catalytical Core Domain (pdb code 4dmn). This binding sites where shown with 5.0 Angstroms radius around Bromine atom.
The 4dmn structure was solved by L.FENG, M.KVARATSKHELIA, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)28.4-2.5
Space groupP3121
a (A)73.082
b (A)73.082
c (A)64.808
alpha (°)90.00
beta (°)90.00
gamma (°)120.00
Rfactor (%)23.1
Rfree (%)27.6


Bromine Binding Sites:

Bromine binding site 1 out of 1 in 4dmn


Bromine binding site 1 out of 1 in 4dmn
Click to enlarge
stereopicture of Bromine binding site 1 out of 1 in 4dmn
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Bromine in the PDB 4dmn. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Bromine atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Thr124, A: Ala128, A: 0l9305,

conact list:


AtomAtomDistance (A)
BrO A:Thr1244.52
BrCB A:Thr1244.95
BrCG2 A:Thr1243.47
BrC A:Thr1244.99
BrCB A:Ala1283.68
BrCA A:Ala1284.95
BrC1 A:0l93051.92
BrC2 A:0l93052.94
BrC6 A:0l93052.87
BrC5 A:0l93054.21
BrC4 A:0l93054.76
BrBR A:0l93050.00
BrC3 A:0l93054.25

interactive model:




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