Bromine in PDB 4dvr: Crystal Structure of YU2 GP120 Core in Complex with Fab 48D and Nbd- 557

The structure of Crystal Structure of YU2 GP120 Core in Complex with Fab 48D and Nbd- 557, PDB code: 4dvr was solved by Y.D.Kwon, P.D.Kwong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.40 / 2.50
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	53.445, 109.738, 130.682, 90.00, 90.00, 90.00
R / Rfree (%)	22.8 / 28.9

The binding sites of Bromine atom in the Crystal Structure of YU2 GP120 Core in Complex with Fab 48D and Nbd- 557 (pdb code 4dvr). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Crystal Structure of YU2 GP120 Core in Complex with Fab 48D and Nbd- 557, PDB code: 4dvr:

Bromine binding site 1 out of 1 in the Crystal Structure of YU2 GP120 Core in Complex with Fab 48D and Nbd- 557


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of YU2 GP120 Core in Complex with Fab 48D and Nbd- 557 within 5.0Å range: probe atom residue distance (Å) B Occ G:Br508 b:83.6 occ:1.00 BR G:0LY508 0.0 83.6 1.0 C2 G:0LY508 1.9 67.0 1.0 C3 G:0LY508 2.9 66.7 1.0 C7 G:0LY508 2.9 58.7 1.0 H1 G:0LY508 2.9 70.5 1.0 H25 G:0LY508 3.0 80.0 1.0 CA G:PHE376 3.3 35.3 1.0 C G:PHE376 3.3 38.4 1.0 N G:ASN377 3.6 38.5 1.0 N G:PHE376 3.6 35.5 1.0 O G:PHE376 3.8 51.8 1.0 CD1 G:PHE382 3.8 64.1 1.0 O G:VAL255 4.0 55.4 1.0 C G:SER375 4.1 46.3 1.0 C4 G:0LY508 4.2 59.3 1.0 C6 G:0LY508 4.2 61.1 1.0 CE1 G:PHE382 4.2 67.6 1.0 CG1 G:VAL255 4.3 31.3 1.0 CB G:ASN377 4.3 62.9 1.0 O G:SER375 4.4 43.5 1.0 CA G:ASN377 4.4 49.1 1.0 CB G:SER375 4.7 64.6 1.0 CH2 G:TRP112 4.7 41.5 1.0 C5 G:0LY508 4.7 60.4 1.0 CB G:PHE376 4.7 38.4 1.0 OG G:SER375 4.7 80.8 1.0 C G:VAL255 4.7 47.7 1.0 CG G:PHE382 4.9 62.4 1.0 O G:HOH628 5.0 49.5 1.0 H2 G:0LY508 5.0 73.3 1.0 H24 G:0LY508 5.0 71.2 1.0

Y.D.Kwon, J.M.Lalonde, Y.Yang, M.A.Elban, A.Sugawara, J.R.Courter, D.M.Jones, A.B.Smith, A.K.Debnath, P.D.Kwong. Crystal Structures of Hiv-1 GP120 Envelope Glycoprotein in Complex with Nbd Analogues That Target the CD4-Binding Site. Plos One V. 9 85940 2014.
ISSN: ESSN 1932-6203
PubMed: 24489681
DOI: 10.1371/JOURNAL.PONE.0085940