Atomistry » Bromine » PDB 4g6w-4i29 » 4g7z
Atomistry »
  Bromine »
    PDB 4g6w-4i29 »
      4g7z »

Bromine in PDB 4g7z: Crystal Structure of Thermus Thermophilus Transcription Initiation Complex Containing 5-Bru at Template-Strand Position +1

Enzymatic activity of Crystal Structure of Thermus Thermophilus Transcription Initiation Complex Containing 5-Bru at Template-Strand Position +1

All present enzymatic activity of Crystal Structure of Thermus Thermophilus Transcription Initiation Complex Containing 5-Bru at Template-Strand Position +1:
2.7.7.6;

Protein crystallography data

The structure of Crystal Structure of Thermus Thermophilus Transcription Initiation Complex Containing 5-Bru at Template-Strand Position +1, PDB code: 4g7z was solved by Y.Zhang, R.H.Ebright, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.85 / 3.81
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 185.465, 103.590, 296.507, 90.00, 98.53, 90.00
R / Rfree (%) 17.6 / 23.2

Other elements in 4g7z:

The structure of Crystal Structure of Thermus Thermophilus Transcription Initiation Complex Containing 5-Bru at Template-Strand Position +1 also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Zinc (Zn) 4 atoms

Bromine Binding Sites:

The binding sites of Bromine atom in the Crystal Structure of Thermus Thermophilus Transcription Initiation Complex Containing 5-Bru at Template-Strand Position +1 (pdb code 4g7z). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Crystal Structure of Thermus Thermophilus Transcription Initiation Complex Containing 5-Bru at Template-Strand Position +1, PDB code: 4g7z:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in 4g7z

Go back to Bromine Binding Sites List in 4g7z
Bromine binding site 1 out of 2 in the Crystal Structure of Thermus Thermophilus Transcription Initiation Complex Containing 5-Bru at Template-Strand Position +1


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of Thermus Thermophilus Transcription Initiation Complex Containing 5-Bru at Template-Strand Position +1 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Br15

b:0.2
occ:0.60
BR G:BRU15 0.0 0.2 0.6
C5 G:BRU15 1.9 0.0 1.0
C6 G:BRU15 2.9 0.5 1.0
C4 G:BRU15 3.0 1.0 1.0
O4 G:BRU15 3.2 0.8 1.0
N7 G:DG14 3.4 0.3 1.0
C5 G:DG14 3.7 0.8 1.0
C8 G:DG14 3.8 0.4 1.0
C4 G:DG14 4.2 1.0 1.0
N9 G:DG14 4.2 0.5 1.0
C6 G:DG14 4.2 0.9 1.0
N1 G:BRU15 4.3 0.3 1.0
N3 G:BRU15 4.3 0.8 1.0
O6 G:DG14 4.5 0.1 1.0
O5' G:BRU15 4.8 0.1 1.0
C2 G:BRU15 4.8 0.3 1.0
C2' G:DG14 4.9 0.6 1.0

Bromine binding site 2 out of 2 in 4g7z

Go back to Bromine Binding Sites List in 4g7z
Bromine binding site 2 out of 2 in the Crystal Structure of Thermus Thermophilus Transcription Initiation Complex Containing 5-Bru at Template-Strand Position +1


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of Thermus Thermophilus Transcription Initiation Complex Containing 5-Bru at Template-Strand Position +1 within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Br15

b:0.9
occ:0.60
BR Q:BRU15 0.0 0.9 0.6
C5 Q:BRU15 1.9 0.9 1.0
C6 Q:BRU15 2.9 0.3 1.0
C4 Q:BRU15 3.0 0.2 1.0
C4 Q:DG14 3.1 0.7 1.0
N9 Q:DG14 3.1 0.4 1.0
O4 Q:BRU15 3.2 0.6 1.0
C5 Q:DG14 3.3 0.7 1.0
C8 Q:DG14 3.4 0.7 1.0
C2' Q:DG14 3.5 0.2 1.0
N7 Q:DG14 3.5 0.0 1.0
N3 Q:DG14 3.6 0.9 1.0
C1' Q:DG14 3.7 0.3 1.0
C6 Q:DG14 4.1 0.8 1.0
C2 Q:DG14 4.2 0.4 1.0
N1 Q:BRU15 4.3 0.5 1.0
N3 Q:BRU15 4.3 0.7 1.0
N1 Q:DG14 4.4 0.1 1.0
C3' Q:DG14 4.4 0.3 1.0
C2 Q:BRU15 4.8 0.4 1.0
O6 Q:DG14 4.9 0.9 1.0

Reference:

Y.Zhang, Y.Feng, S.Chatterjee, S.Tuske, M.X.Ho, E.Arnold, R.H.Ebright. Structural Basis of Transcription Initiation. Science V. 338 1076 2012.
ISSN: ISSN 0036-8075
PubMed: 23086998
DOI: 10.1126/SCIENCE.1227786
Page generated: Wed Jul 10 21:21:31 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy