Bromine in PDB 4gao: Dcnl Complex with N-Terminally Acetylated NEDD8 E2 Peptide

The structure of Dcnl Complex with N-Terminally Acetylated NEDD8 E2 Peptide, PDB code: 4gao was solved by J.K.Monda, D.C.Scott, D.J.Miller, J.W.Harper, E.J.Bennett, B.A.Schulman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 3.28
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	48.567, 190.151, 49.072, 90.00, 101.75, 90.00
R / Rfree (%)	25.2 / 29.6

The binding sites of Bromine atom in the Dcnl Complex with N-Terminally Acetylated NEDD8 E2 Peptide (pdb code 4gao). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Dcnl Complex with N-Terminally Acetylated NEDD8 E2 Peptide, PDB code: 4gao:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in the Dcnl Complex with N-Terminally Acetylated NEDD8 E2 Peptide


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Dcnl Complex with N-Terminally Acetylated NEDD8 E2 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Br301 b:46.8 occ:1.00 OG A:SER118 3.2 34.7 1.0 CB A:LYS120 3.7 39.6 1.0 CB A:SER118 3.7 35.1 1.0 CG A:LYS120 4.1 40.6 1.0 CA A:LYS120 4.6 39.1 1.0 N A:LYS120 4.7 38.7 1.0 N A:GLU121 4.8 38.6 1.0 C A:LYS120 5.0 38.6 1.0

Bromine binding site 2 out of 2 in the Dcnl Complex with N-Terminally Acetylated NEDD8 E2 Peptide


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Dcnl Complex with N-Terminally Acetylated NEDD8 E2 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ B:Br301 b:52.6 occ:1.00 OG B:SER118 3.1 44.9 1.0 OE1 B:GLU121 3.8 46.7 1.0 CB B:SER118 3.9 44.4 1.0 CB B:LYS120 4.1 47.0 1.0 CG B:GLU121 4.2 46.2 1.0 CG B:LYS120 4.4 47.5 1.0 CD B:GLU121 4.5 46.7 1.0 CE B:LYS120 4.5 48.0 1.0 N B:GLU121 4.7 46.5 1.0 CD B:LYS120 5.0 48.4 1.0

J.K.Monda, D.C.Scott, D.J.Miller, J.Lydeard, D.King, J.W.Harper, E.J.Bennett, B.A.Schulman. Structural Conservation of Distinctive N-Terminal Acetylation-Dependent Interactions Across A Family of Mammalian NEDD8 Ligation Enzymes. Structure V. 21 42 2013.
ISSN: ISSN 0969-2126
PubMed: 23201271
DOI: 10.1016/J.STR.2012.10.013