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Bromine in PDB 4gio: Crystal Structure of Campylobacter Jejuni CJ0090

Protein crystallography data

The structure of Crystal Structure of Campylobacter Jejuni CJ0090, PDB code: 4gio was solved by F.Kawai, H.J.Yeo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.76 / 1.90
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 51.151, 51.151, 186.786, 90.00, 90.00, 90.00
R / Rfree (%) 19.6 / 24.4

Bromine Binding Sites:

The binding sites of Bromine atom in the Crystal Structure of Campylobacter Jejuni CJ0090 (pdb code 4gio). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 3 binding sites of Bromine where determined in the Crystal Structure of Campylobacter Jejuni CJ0090, PDB code: 4gio:
Jump to Bromine binding site number: 1; 2; 3;

Bromine binding site 1 out of 3 in 4gio

Go back to Bromine Binding Sites List in 4gio
Bromine binding site 1 out of 3 in the Crystal Structure of Campylobacter Jejuni CJ0090


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of Campylobacter Jejuni CJ0090 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br201

b:30.6
occ:1.00
N A:ALA120 3.3 19.4 1.0
N A:ASN34 3.4 23.0 1.0
CA A:GLY32 3.5 18.6 1.0
C A:GLY32 3.6 18.6 1.0
CB A:ASN34 3.7 22.1 1.0
CA A:LYS119 3.8 17.3 1.0
CB A:LYS119 3.8 17.9 1.0
N A:SER33 3.8 20.2 1.0
CA A:ASN34 4.0 22.8 1.0
C A:LYS119 4.0 17.8 1.0
CB A:ALA120 4.1 21.7 1.0
ND2 A:ASN34 4.1 25.8 1.0
O A:GLY32 4.1 18.1 1.0
CA A:ALA120 4.3 22.0 1.0
C A:ASN34 4.3 24.3 1.0
CG A:LEU35 4.3 18.7 1.0
N A:GLY32 4.3 18.2 1.0
CG A:ASN34 4.3 22.4 1.0
N A:LEU35 4.4 22.0 1.0
C A:SER33 4.5 22.9 1.0
CA A:SER33 4.7 22.7 1.0
O A:ALA120 4.8 22.3 1.0
CD1 A:LEU35 4.9 21.9 1.0
OD2 B:ASP77 5.0 27.2 1.0
OG A:SER33 5.0 24.9 1.0

Bromine binding site 2 out of 3 in 4gio

Go back to Bromine Binding Sites List in 4gio
Bromine binding site 2 out of 3 in the Crystal Structure of Campylobacter Jejuni CJ0090


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of Campylobacter Jejuni CJ0090 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br201

b:21.2
occ:1.00
ND2 B:ASN50 3.3 13.6 1.0
ND2 B:ASN48 3.4 11.5 1.0
CD1 B:TYR52 3.8 20.3 1.0
CB B:ASN50 3.8 15.8 1.0
CG B:ASN50 4.1 18.4 1.0
OD1 B:ASN48 4.2 15.5 1.0
CG B:ASN48 4.2 15.2 1.0
CD2 B:LEU105 4.3 13.9 1.0
CD1 B:LEU105 4.4 12.7 1.0
CG B:TYR52 4.4 21.8 1.0
CE1 B:TYR52 4.4 22.9 1.0
CB B:TYR52 4.5 15.8 1.0
CG B:LEU105 4.8 15.6 1.0

Bromine binding site 3 out of 3 in 4gio

Go back to Bromine Binding Sites List in 4gio
Bromine binding site 3 out of 3 in the Crystal Structure of Campylobacter Jejuni CJ0090


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Crystal Structure of Campylobacter Jejuni CJ0090 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br202

b:32.4
occ:1.00
N B:ALA120 3.3 22.9 1.0
N B:ASN34 3.4 20.4 1.0
CB B:ASN34 3.6 19.7 1.0
CA B:GLY32 3.6 21.4 1.0
C B:GLY32 3.7 20.0 1.0
CB B:LYS119 3.8 20.8 1.0
N B:SER33 3.8 21.1 1.0
CA B:LYS119 3.8 20.6 1.0
CB B:ALA120 3.9 24.2 1.0
CA B:ASN34 3.9 21.7 1.0
C B:LYS119 4.1 20.9 1.0
O B:GLY32 4.2 20.1 1.0
CA B:ALA120 4.2 24.6 1.0
C B:ASN34 4.3 21.4 1.0
ND2 B:ASN34 4.3 25.1 1.0
N B:LEU35 4.4 22.2 1.0
N B:GLY32 4.4 20.8 1.0
CG B:ASN34 4.4 23.5 1.0
CG B:LEU35 4.5 24.6 1.0
C B:SER33 4.5 21.8 1.0
CA B:SER33 4.8 21.1 1.0
CD1 B:LEU35 4.9 24.6 1.0
O B:ALA120 4.9 27.8 1.0
O B:ASN34 4.9 20.7 1.0
OD2 A:ASP77 5.0 30.8 1.0

Reference:

S.Paek, F.Kawai, K.J.Choi, H.J.Yeo. Crystal Structure of the Campylobacter Jejuni CJ0090 Protein Reveals A Novel Variant of the Immunoglobulin Fold Among Bacterial Lipoproteins. Proteins V. 80 2804 2012.
ISSN: ISSN 0887-3585
PubMed: 22987763
DOI: 10.1002/PROT.24182
Page generated: Sat Dec 12 02:19:41 2020

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