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Bromine in PDB 4io1: Crystal Structure of Ribose-5-Isomerase A From Francisella Tularensis

Enzymatic activity of Crystal Structure of Ribose-5-Isomerase A From Francisella Tularensis

All present enzymatic activity of Crystal Structure of Ribose-5-Isomerase A From Francisella Tularensis:
5.3.1.6;

Protein crystallography data

The structure of Crystal Structure of Ribose-5-Isomerase A From Francisella Tularensis, PDB code: 4io1 was solved by R.Rostankowski, C.Nakka, S.Grimshaw, D.Borek, Z.Otwinowski, Center Forstructural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.63 / 1.65
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 36.281, 85.765, 70.634, 90.00, 94.52, 90.00
R / Rfree (%) 14.8 / 18.2

Other elements in 4io1:

The structure of Crystal Structure of Ribose-5-Isomerase A From Francisella Tularensis also contains other interesting chemical elements:

Chlorine (Cl) 6 atoms

Bromine Binding Sites:

The binding sites of Bromine atom in the Crystal Structure of Ribose-5-Isomerase A From Francisella Tularensis (pdb code 4io1). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Crystal Structure of Ribose-5-Isomerase A From Francisella Tularensis, PDB code: 4io1:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in 4io1

Go back to Bromine Binding Sites List in 4io1
Bromine binding site 1 out of 2 in the Crystal Structure of Ribose-5-Isomerase A From Francisella Tularensis


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of Ribose-5-Isomerase A From Francisella Tularensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br305

b:40.9
occ:0.35
N A:THR131 3.4 26.4 1.0
N A:ASN130 3.4 27.2 1.0
ND2 A:ASN134 3.5 36.1 1.0
O A:THR131 3.8 22.9 1.0
CB A:ASN130 3.9 35.3 1.0
CB A:VAL129 3.9 22.3 1.0
CA A:ASN130 4.0 29.3 1.0
C A:ASN130 4.1 26.4 1.0
CB A:THR131 4.2 33.2 1.0
CA A:THR131 4.2 27.4 1.0
C A:VAL129 4.3 24.0 1.0
O A:HOH498 4.4 28.3 1.0
CA A:VAL129 4.4 25.1 1.0
CG A:ASN134 4.4 28.1 1.0
C A:THR131 4.4 23.3 1.0
OG1 A:THR131 4.5 39.8 1.0
OD1 A:ASN134 4.5 26.1 1.0
CG1 A:VAL129 4.7 28.3 1.0
CG2 A:VAL129 4.9 21.6 1.0
CG A:ASN130 4.9 45.1 1.0

Bromine binding site 2 out of 2 in 4io1

Go back to Bromine Binding Sites List in 4io1
Bromine binding site 2 out of 2 in the Crystal Structure of Ribose-5-Isomerase A From Francisella Tularensis


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of Ribose-5-Isomerase A From Francisella Tularensis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br303

b:78.1
occ:0.40
NZ B:LYS181 3.2 53.8 1.0
O B:LEU180 3.3 26.2 1.0
CA B:LYS181 3.6 23.5 1.0
CG B:LYS181 3.8 37.7 1.0
CB B:LYS181 3.9 30.6 1.0
C B:LEU180 4.1 21.0 1.0
CE B:LYS181 4.1 58.5 1.0
N B:LYS181 4.2 22.7 1.0
O B:LEU132 4.2 20.7 1.0
N B:ASN134 4.3 22.4 1.0
C B:GLY133 4.3 24.1 1.0
CD B:LYS181 4.4 52.8 1.0
CA B:GLY133 4.5 22.3 1.0
O B:GLY133 4.8 22.5 1.0
C B:LEU132 4.8 22.9 1.0
C B:LYS181 4.9 24.3 1.0
N B:GLY133 4.9 21.3 1.0
CA B:ASN134 4.9 24.0 1.0
O B:HOH414 4.9 20.1 1.0
CG2 B:THR131 4.9 28.3 1.0
O B:THR131 5.0 24.6 1.0
N B:ILE182 5.0 22.3 1.0

Reference:

R.Rostankowski, M.Orlikowska, C.Nakka, S.Grimshaw, D.Borek, Z.Otwinowski, Center For Structural Genomics Of Infectious Diseases(Csgid). Structural and Biophysical Studies of Ribose-5-Phosphate Isomerase A From Francisella Tularensis To Be Published.
Page generated: Wed Jul 10 21:39:01 2024

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