Bromine in PDB 4j9u: Crystal Structure of the Trkh/Trka Potassium Transport Complex

The structure of Crystal Structure of the Trkh/Trka Potassium Transport Complex, PDB code: 4j9u was solved by Y.Cao, X.Jin, H.Huang, E.J.Levin, M.Zhou, New York Consortium On Membraneprotein Structure (Nycomps), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.79 / 3.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	133.725, 146.627, 163.672, 90.00, 99.32, 90.00
R / Rfree (%)	23.2 / 28

The structure of Crystal Structure of the Trkh/Trka Potassium Transport Complex also contains other interesting chemical elements:

Potassium	(K)	4 atoms
Tantalum	(Ta)	108 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 140; Page 15, Binding sites: 141 - 150; Page 16, Binding sites: 151 - 160; Page 17, Binding sites: 161 - 170; Page 18, Binding sites: 171 - 180; Page 19, Binding sites: 181 - 190; Page 20, Binding sites: 191 - 200; Page 21, Binding sites: 201 - 210; Page 22, Binding sites: 211 - 216;

Binding sites:

The binding sites of Bromine atom in the Crystal Structure of the Trkh/Trka Potassium Transport Complex (pdb code 4j9u). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 216 binding sites of Bromine where determined in the Crystal Structure of the Trkh/Trka Potassium Transport Complex, PDB code: 4j9u:
Jump to Bromine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Bromine binding site 1 out of 216 in the Crystal Structure of the Trkh/Trka Potassium Transport Complex


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of the Trkh/Trka Potassium Transport Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Br501 b:0.4 occ:0.45 BR1 A:TBR501 0.0 0.4 0.5 TA1 A:TBR501 2.6 0.3 0.5 TA2 A:TBR501 2.6 0.7 0.5 BR5 A:TBR501 3.6 91.3 0.5 BR2 A:TBR501 3.6 0.4 0.5 BR4 A:TBR501 3.7 0.5 0.5 BRC A:TBR501 3.7 0.1 0.5 CB E:GLU292 3.9 55.7 1.0 OE2 E:GLU292 4.0 87.2 1.0 O E:GLU288 4.0 53.0 1.0 TA3 A:TBR501 4.1 0.9 0.5 TA6 A:TBR501 4.2 0.4 0.5 CD E:GLU292 4.4 90.0 1.0 CA E:GLU288 4.5 81.1 1.0 C E:GLU288 4.5 74.0 1.0 CG E:GLU292 4.5 86.4 1.0 CA E:GLU292 4.6 55.6 1.0 CB E:GLU288 4.7 94.0 1.0 N E:GLU292 4.8 54.2 1.0

Bromine binding site 2 out of 216 in the Crystal Structure of the Trkh/Trka Potassium Transport Complex


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of the Trkh/Trka Potassium Transport Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Br501 b:0.4 occ:0.45 BR2 A:TBR501 0.0 0.4 0.5 TA1 A:TBR501 2.6 0.3 0.5 TA3 A:TBR501 2.6 0.9 0.5 BR3 A:TBR501 3.6 0.6 0.5 BR6 A:TBR501 3.6 0.3 0.5 BR1 A:TBR501 3.6 0.4 0.5 BR5 A:TBR501 3.7 91.3 0.5 CB E:THR291 4.1 55.3 1.0 TA5 A:TBR501 4.1 0.7 0.5 OG1 E:THR291 4.1 54.5 1.0 TA2 A:TBR501 4.2 0.7 0.5 CG2 E:THR291 4.7 56.4 1.0

Bromine binding site 3 out of 216 in the Crystal Structure of the Trkh/Trka Potassium Transport Complex


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Crystal Structure of the Trkh/Trka Potassium Transport Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Br501 b:0.6 occ:0.45 BR3 A:TBR501 0.0 0.6 0.5 TA1 A:TBR501 2.6 0.3 0.5 TA5 A:TBR501 2.6 0.7 0.5 NZ F:LYS42 3.2 93.0 1.0 BR2 A:TBR501 3.6 0.4 0.5 BR6 A:TBR501 3.6 0.3 0.5 BR4 A:TBR501 3.6 0.5 0.5 BRB A:TBR501 3.6 0.4 0.5 TA6 A:TBR501 4.2 0.4 0.5 TA3 A:TBR501 4.2 0.9 0.5 CG F:LYS42 4.4 84.2 1.0 CE F:LYS42 4.4 85.1 1.0 CD F:LYS42 4.9 81.7 1.0

Bromine binding site 4 out of 216 in the Crystal Structure of the Trkh/Trka Potassium Transport Complex


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Crystal Structure of the Trkh/Trka Potassium Transport Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Br501 b:0.5 occ:0.45 BR4 A:TBR501 0.0 0.5 0.5 TA6 A:TBR501 2.6 0.4 0.5 TA1 A:TBR501 2.6 0.3 0.5 BR3 A:TBR501 3.6 0.6 0.5 BRB A:TBR501 3.6 0.4 0.5 BRC A:TBR501 3.7 0.1 0.5 BR1 A:TBR501 3.7 0.4 0.5 TA5 A:TBR501 4.1 0.7 0.5 TA2 A:TBR501 4.2 0.7 0.5 CB F:ASP41 4.3 89.0 1.0 NZ F:LYS42 4.5 93.0 1.0 C F:ASP41 4.6 93.5 1.0 O F:ASP41 4.6 0.2 1.0 CG F:ASP41 4.6 90.6 1.0 CG F:LYS42 4.7 84.2 1.0 CA F:LYS42 4.7 87.2 1.0 N F:LYS42 4.7 86.5 1.0 OD2 F:ASP41 4.7 72.5 1.0 CE F:LYS42 4.8 85.1 1.0 CB F:LYS42 5.0 63.5 1.0

Bromine binding site 5 out of 216 in the Crystal Structure of the Trkh/Trka Potassium Transport Complex


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 5 of Crystal Structure of the Trkh/Trka Potassium Transport Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Br501 b:91.3 occ:0.45 BR5 A:TBR501 0.0 91.3 0.5 TA2 A:TBR501 2.6 0.7 0.5 TA3 A:TBR501 2.6 0.9 0.5 BRA A:TBR501 3.6 0.5 0.5 BR9 A:TBR501 3.6 0.4 0.5 BR1 A:TBR501 3.6 0.4 0.5 BR2 A:TBR501 3.7 0.4 0.5 TA4 A:TBR501 4.1 86.5 0.5 TA1 A:TBR501 4.2 0.3 0.5 CA E:GLU292 4.3 55.6 1.0 CB E:GLU292 4.7 55.7 1.0 N E:GLU292 4.8 54.2 1.0 CG E:GLU292 5.0 86.4 1.0

Bromine binding site 6 out of 216 in the Crystal Structure of the Trkh/Trka Potassium Transport Complex


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 6 of Crystal Structure of the Trkh/Trka Potassium Transport Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Br501 b:0.3 occ:0.45 BR6 A:TBR501 0.0 0.3 0.5 TA5 A:TBR501 2.6 0.7 0.5 TA3 A:TBR501 2.6 0.9 0.5 BR3 A:TBR501 3.6 0.6 0.5 BR2 A:TBR501 3.6 0.4 0.5 BR7 A:TBR501 3.6 0.5 0.5 BRA A:TBR501 3.7 0.5 0.5 TA1 A:TBR501 4.1 0.3 0.5 TA4 A:TBR501 4.2 86.5 0.5

Bromine binding site 7 out of 216 in the Crystal Structure of the Trkh/Trka Potassium Transport Complex


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 7 of Crystal Structure of the Trkh/Trka Potassium Transport Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Br501 b:0.5 occ:0.45 BR7 A:TBR501 0.0 0.5 0.5 TA5 A:TBR501 2.6 0.7 0.5 TA4 A:TBR501 2.6 86.5 0.5 NE2 A:HIS62 3.5 0.9 1.0 BR8 A:TBR501 3.6 0.3 0.5 BRB A:TBR501 3.6 0.4 0.5 BR6 A:TBR501 3.6 0.3 0.5 BRA A:TBR501 3.6 0.5 0.5 CE1 A:HIS62 4.1 0.6 1.0 TA3 A:TBR501 4.2 0.9 0.5 TA6 A:TBR501 4.2 0.4 0.5 O A:PRO151 4.3 94.1 1.0 CD2 A:HIS62 4.3 0.8 1.0

Bromine binding site 8 out of 216 in the Crystal Structure of the Trkh/Trka Potassium Transport Complex


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 8 of Crystal Structure of the Trkh/Trka Potassium Transport Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Br501 b:0.3 occ:0.45 BR8 A:TBR501 0.0 0.3 0.5 TA4 A:TBR501 2.6 86.5 0.5 TA6 A:TBR501 2.6 0.4 0.5 BR7 A:TBR501 3.6 0.5 0.5 BRB A:TBR501 3.6 0.4 0.5 BRC A:TBR501 3.6 0.1 0.5 BR9 A:TBR501 3.6 0.4 0.5 O A:PRO151 3.6 94.1 1.0 O A:LEU150 3.8 50.7 1.0 TA5 A:TBR501 4.1 0.7 0.5 TA2 A:TBR501 4.2 0.7 0.5 C A:PRO151 4.4 80.7 1.0 CA A:PRO151 4.4 67.2 1.0 C A:LEU150 4.9 59.4 1.0 O F:ASP41 4.9 0.2 1.0

Bromine binding site 9 out of 216 in the Crystal Structure of the Trkh/Trka Potassium Transport Complex


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 9 of Crystal Structure of the Trkh/Trka Potassium Transport Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Br501 b:0.4 occ:0.45 BR9 A:TBR501 0.0 0.4 0.5 TA4 A:TBR501 2.6 86.5 0.5 TA2 A:TBR501 2.6 0.7 0.5 BRC A:TBR501 3.5 0.1 0.5 BR5 A:TBR501 3.6 91.3 0.5 BRA A:TBR501 3.6 0.5 0.5 BR8 A:TBR501 3.6 0.3 0.5 O A:PRO151 4.1 94.1 1.0 TA6 A:TBR501 4.2 0.4 0.5 TA3 A:TBR501 4.2 0.9 0.5 O A:VAL152 4.5 97.7 1.0 N A:SER66 4.5 65.5 1.0 OG A:SER66 4.5 87.9 1.0 C A:VAL152 4.9 95.2 1.0

Bromine binding site 10 out of 216 in the Crystal Structure of the Trkh/Trka Potassium Transport Complex


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 10 of Crystal Structure of the Trkh/Trka Potassium Transport Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Br501 b:0.5 occ:0.45 BRA A:TBR501 0.0 0.5 0.5 TA3 A:TBR501 2.6 0.9 0.5 TA4 A:TBR501 2.6 86.5 0.5 BR5 A:TBR501 3.6 91.3 0.5 BR9 A:TBR501 3.6 0.4 0.5 BR7 A:TBR501 3.6 0.5 0.5 BR6 A:TBR501 3.7 0.3 0.5 TA2 A:TBR501 4.1 0.7 0.5 TA5 A:TBR501 4.2 0.7 0.5 O A:HIS62 4.2 79.5 1.0 C A:HIS62 4.5 91.2 1.0 CE1 A:HIS62 4.7 0.6 1.0 O A:PRO151 4.7 94.1 1.0 NE2 A:HIS62 4.8 0.9 1.0 ND1 A:HIS62 4.9 0.5 1.0

Y.Cao, Y.Pan, H.Huang, X.Jin, E.J.Levin, B.Kloss, M.Zhou. Gating of the Trkh Ion Channel By Its Associated Rck Protein Trka. Nature V. 496 317 2013.
ISSN: ISSN 0028-0836
PubMed: 23598339
DOI: 10.1038/NATURE12056