Bromine in PDB 4p3s: Crystal Structure of the Bacterial A1408C-Mutant Ribosomal Decoding Site in Complex with Geneticin

The structure of Crystal Structure of the Bacterial A1408C-Mutant Ribosomal Decoding Site in Complex with Geneticin, PDB code: 4p3s was solved by J.Kondo, M.Koganei, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	100.00 / 2.30
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	34.090, 88.830, 46.610, 90.00, 90.00, 90.00
R / Rfree (%)	21.9 / 26.5

The binding sites of Bromine atom in the Crystal Structure of the Bacterial A1408C-Mutant Ribosomal Decoding Site in Complex with Geneticin (pdb code 4p3s). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Crystal Structure of the Bacterial A1408C-Mutant Ribosomal Decoding Site in Complex with Geneticin, PDB code: 4p3s:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in the Crystal Structure of the Bacterial A1408C-Mutant Ribosomal Decoding Site in Complex with Geneticin


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of the Bacterial A1408C-Mutant Ribosomal Decoding Site in Complex with Geneticin within 5.0Å range: probe atom residue distance (Å) B Occ A:Br11 b:39.8 occ:1.00 BR A:5BU11 0.0 39.8 1.0 C5 A:5BU11 1.9 37.8 1.0 C6 A:5BU11 2.9 34.5 1.0 C4 A:5BU11 2.9 37.2 1.0 O A:HOH256 3.2 43.3 1.0 O4 A:5BU11 3.2 33.8 1.0 O A:HOH233 3.4 27.1 1.0 O A:HOH268 3.5 36.2 1.0 C8 A:G10 3.6 29.8 1.0 N7 A:G10 3.6 27.8 1.0 OP2 A:5BU11 3.7 29.2 1.0 C5 A:G10 3.7 28.6 1.0 N9 A:G10 3.7 29.2 1.0 C4 A:G10 3.8 30.3 1.0 C3' A:G10 4.1 28.7 1.0 C2' A:G10 4.1 29.4 1.0 N1 A:5BU11 4.2 33.1 1.0 N3 A:5BU11 4.2 35.8 1.0 O5' A:5BU11 4.4 32.1 1.0 C6 A:G10 4.4 26.7 1.0 C5 A:C12 4.4 30.1 1.0 O A:HOH232 4.5 31.0 1.0 C1' A:G10 4.5 29.4 1.0 N4 A:C12 4.5 26.2 1.0 N3 A:G10 4.5 29.6 1.0 P A:5BU11 4.6 29.6 1.0 O5' A:G10 4.6 31.0 1.0 C2 A:5BU11 4.7 35.5 1.0 C4 A:C12 4.8 30.2 1.0 O3' A:G10 4.8 29.0 1.0 OP2 A:G10 5.0 33.3 1.0 N1 A:G10 5.0 27.6 1.0

Bromine binding site 2 out of 2 in the Crystal Structure of the Bacterial A1408C-Mutant Ribosomal Decoding Site in Complex with Geneticin


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of the Bacterial A1408C-Mutant Ribosomal Decoding Site in Complex with Geneticin within 5.0Å range: probe atom residue distance (Å) B Occ B:Br34 b:48.9 occ:1.00 BR B:5BU34 0.0 48.9 1.0 C5 B:5BU34 1.9 38.0 1.0 C6 B:5BU34 2.8 37.4 1.0 C4 B:5BU34 2.9 36.4 1.0 O B:HOH162 3.0 51.1 1.0 O4 B:5BU34 3.2 34.1 1.0 N7 B:G33 3.5 36.7 1.0 C8 B:G33 3.6 36.1 1.0 O B:HOH148 3.6 42.5 1.0 C5 B:G33 3.6 35.8 1.0 OP2 B:5BU34 3.6 39.3 1.0 N9 B:G33 3.7 37.9 1.0 C4 B:G33 3.8 35.1 1.0 O B:HOH153 3.9 54.4 1.0 O B:HOH164 4.0 49.3 1.0 N1 B:5BU34 4.1 36.4 1.0 N3 B:5BU34 4.2 34.3 1.0 C3' B:G33 4.2 42.7 1.0 C2' B:G33 4.2 41.8 1.0 C6 B:G33 4.3 36.3 1.0 O5' B:5BU34 4.3 40.0 1.0 N3 B:G33 4.5 35.0 1.0 P B:5BU34 4.5 41.3 1.0 C1' B:G33 4.5 40.9 1.0 C2 B:5BU34 4.7 35.5 1.0 N1 B:G33 4.8 34.5 1.0 O6 B:G33 4.8 37.8 1.0 O3' B:G33 4.9 41.2 1.0 N4 B:C35 4.9 28.6 1.0 C2 B:G33 4.9 34.6 1.0

J.Kondo, M.Koganei. Crystal Structure of the Bacterial A1408C-Mutant Ribosomal Decoding Site in Complex with Geneticin To Be Published.