Bromine in PDB 4p3t: Crystal Structure of the Bacterial A1408C-Mutant Ribosomal Decoding Site

The structure of Crystal Structure of the Bacterial A1408C-Mutant Ribosomal Decoding Site, PDB code: 4p3t was solved by J.Kondo, M.Koganei, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.60
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	33.437, 40.475, 41.272, 90.00, 103.07, 90.00
R / Rfree (%)	24.8 / 27.1

The binding sites of Bromine atom in the Crystal Structure of the Bacterial A1408C-Mutant Ribosomal Decoding Site (pdb code 4p3t). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Crystal Structure of the Bacterial A1408C-Mutant Ribosomal Decoding Site, PDB code: 4p3t:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in the Crystal Structure of the Bacterial A1408C-Mutant Ribosomal Decoding Site


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of the Bacterial A1408C-Mutant Ribosomal Decoding Site within 5.0Å range: probe atom residue distance (Å) B Occ A:Br11 b:23.8 occ:1.00 BR A:5BU11 0.0 23.8 1.0 C5 A:5BU11 1.9 17.9 1.0 C6 A:5BU11 2.8 19.5 1.0 C4 A:5BU11 2.9 20.0 1.0 O4 A:5BU11 3.1 18.3 1.0 O A:HOH173 3.5 49.2 1.0 O A:HOH160 3.5 29.3 1.0 O A:HOH151 3.5 34.4 1.0 OP2 A:5BU11 3.6 25.6 1.0 C5 A:G10 3.6 16.4 1.0 N7 A:G10 3.6 16.9 1.0 C4 A:G10 3.7 17.9 1.0 C8 A:G10 3.7 16.3 1.0 O A:HOH138 3.7 30.7 1.0 N9 A:G10 3.7 18.0 1.0 O A:HOH133 3.8 29.4 1.0 O A:HOH140 3.9 32.0 1.0 C3' A:G10 4.0 19.5 1.0 C2' A:G10 4.1 17.6 1.0 N3 A:5BU11 4.1 18.7 1.0 N1 A:5BU11 4.1 20.6 1.0 C6 A:G10 4.2 15.2 1.0 O5' A:5BU11 4.2 23.9 1.0 N3 A:G10 4.3 16.9 1.0 P A:5BU11 4.4 24.2 1.0 C1' A:G10 4.5 18.7 1.0 N1 A:G10 4.6 15.3 1.0 C2 A:G10 4.7 14.3 1.0 C2 A:5BU11 4.7 21.7 1.0 O6 A:G10 4.7 16.5 1.0 O3' A:G10 4.8 21.8 1.0 O A:HOH130 4.8 30.4 1.0 N4 A:C12 4.8 22.0 1.0

Bromine binding site 2 out of 2 in the Crystal Structure of the Bacterial A1408C-Mutant Ribosomal Decoding Site


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of the Bacterial A1408C-Mutant Ribosomal Decoding Site within 5.0Å range: probe atom residue distance (Å) B Occ B:Br34 b:38.2 occ:1.00 BR B:5BU34 0.0 38.2 1.0 C5 B:5BU34 1.9 34.6 1.0 C6 B:5BU34 2.8 32.6 1.0 C4 B:5BU34 2.9 33.5 1.0 O4 B:5BU34 3.2 32.3 1.0 O B:HOH167 3.3 46.8 1.0 OP2 B:5BU34 3.6 42.3 1.0 N7 B:G33 3.6 32.5 1.0 C8 B:G33 3.7 31.8 1.0 O B:HOH155 3.7 37.6 1.0 O B:HOH147 3.8 37.1 1.0 C5 B:G33 3.9 32.0 1.0 N9 B:G33 4.0 35.0 1.0 N1 B:5BU34 4.1 33.5 1.0 N3 B:5BU34 4.1 33.4 1.0 C4 B:G33 4.1 32.7 1.0 C3' B:G33 4.2 39.5 1.0 C2' B:G33 4.3 38.7 1.0 O5' B:5BU34 4.3 39.5 1.0 P B:5BU34 4.5 40.7 1.0 O B:HOH151 4.5 40.1 1.0 C6 B:G33 4.6 30.4 1.0 C2 B:5BU34 4.7 32.1 1.0 C1' B:G33 4.7 37.2 1.0 N4 B:C35 4.8 33.4 1.0 O3' B:G33 4.9 39.6 1.0 N3 B:G33 4.9 33.2 1.0 C5 B:C35 5.0 31.8 1.0

J.Kondo, M.Koganei. Crystal Structure of the Bacterial A1408C-Mutant Ribosomal Decoding Site To Be Published.