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Bromine in PDB 4pm3: Structure of the Double-Stranded Dna Binding Type IV Secretion Protein Tran From Enterococcus

Protein crystallography data

The structure of Structure of the Double-Stranded Dna Binding Type IV Secretion Protein Tran From Enterococcus, PDB code: 4pm3 was solved by N.Goessweiner-Mohr, W.Keller, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.97 / 1.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 32.880, 54.940, 57.710, 90.00, 91.89, 90.00
R / Rfree (%) 16.9 / 21.3

Other elements in 4pm3:

The structure of Structure of the Double-Stranded Dna Binding Type IV Secretion Protein Tran From Enterococcus also contains other interesting chemical elements:

Platinum (Pt) 2 atoms

Bromine Binding Sites:

The binding sites of Bromine atom in the Structure of the Double-Stranded Dna Binding Type IV Secretion Protein Tran From Enterococcus (pdb code 4pm3). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 4 binding sites of Bromine where determined in the Structure of the Double-Stranded Dna Binding Type IV Secretion Protein Tran From Enterococcus, PDB code: 4pm3:
Jump to Bromine binding site number: 1; 2; 3; 4;

Bromine binding site 1 out of 4 in 4pm3

Go back to Bromine Binding Sites List in 4pm3
Bromine binding site 1 out of 4 in the Structure of the Double-Stranded Dna Binding Type IV Secretion Protein Tran From Enterococcus


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Structure of the Double-Stranded Dna Binding Type IV Secretion Protein Tran From Enterococcus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br202

b:41.9
occ:0.50
PT A:PT201 2.5 19.1 0.5
BR A:BR203 3.0 36.1 0.5
NH2 A:ARG86 3.3 26.2 1.0
NH1 A:ARG86 3.4 20.8 1.0
CZ A:ARG86 3.8 22.3 1.0
CD A:LYS85 4.2 11.9 1.0
O A:HOH316 4.4 32.2 1.0
ND1 A:HIS82 4.6 12.8 1.0
NZ A:LYS85 4.8 13.7 1.0
CE A:LYS85 5.0 16.3 1.0
CA A:HIS82 5.0 9.7 1.0

Bromine binding site 2 out of 4 in 4pm3

Go back to Bromine Binding Sites List in 4pm3
Bromine binding site 2 out of 4 in the Structure of the Double-Stranded Dna Binding Type IV Secretion Protein Tran From Enterococcus


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Structure of the Double-Stranded Dna Binding Type IV Secretion Protein Tran From Enterococcus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br203

b:36.1
occ:0.50
PT A:PT201 1.8 19.1 0.5
ND1 A:HIS82 2.8 12.8 1.0
BR A:BR202 3.0 41.9 0.5
CB A:HIS82 3.5 11.3 1.0
CG A:HIS82 3.6 14.0 1.0
CE1 A:HIS82 3.9 16.3 1.0
CA A:HIS82 4.0 9.7 1.0
CB A:GLU78 4.1 14.6 1.0
NH1 A:ARG86 4.1 20.8 1.0
O A:GLU78 4.4 13.1 1.0
NH2 A:ARG86 4.4 26.2 1.0
N A:HIS82 4.5 7.0 1.0
CZ A:ARG86 4.5 22.3 1.0
CG A:GLU78 4.6 22.6 1.0
CD2 A:HIS82 4.8 11.7 1.0
NE2 A:HIS82 5.0 11.1 1.0

Bromine binding site 3 out of 4 in 4pm3

Go back to Bromine Binding Sites List in 4pm3
Bromine binding site 3 out of 4 in the Structure of the Double-Stranded Dna Binding Type IV Secretion Protein Tran From Enterococcus


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Structure of the Double-Stranded Dna Binding Type IV Secretion Protein Tran From Enterococcus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br202

b:45.7
occ:0.50
PT B:PT201 2.3 23.3 0.5
BR B:BR203 3.2 51.3 0.5
ND1 B:HIS82 3.2 12.5 1.0
CB B:GLU78 3.6 18.3 1.0
CB B:HIS82 3.6 11.4 1.0
CG B:HIS82 3.8 12.6 1.0
CG B:GLU78 4.2 31.6 1.0
O B:GLU78 4.2 13.1 1.0
CE1 B:HIS82 4.3 14.8 1.0
CA B:HIS82 4.5 9.7 1.0
C B:GLU78 4.8 11.0 1.0
CA B:GLU78 4.8 13.5 1.0
NH1 B:ARG86 4.9 19.2 1.0
N B:HIS82 4.9 7.9 1.0
CD2 B:HIS82 5.0 9.9 1.0

Bromine binding site 4 out of 4 in 4pm3

Go back to Bromine Binding Sites List in 4pm3
Bromine binding site 4 out of 4 in the Structure of the Double-Stranded Dna Binding Type IV Secretion Protein Tran From Enterococcus


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Structure of the Double-Stranded Dna Binding Type IV Secretion Protein Tran From Enterococcus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br203

b:51.3
occ:0.50
PT B:PT201 2.5 23.3 0.5
BR B:BR202 3.2 45.7 0.5
NH2 B:ARG86 4.0 27.5 1.0
NH1 B:ARG86 4.2 19.2 1.0
CZ B:ARG86 4.5 21.7 1.0
ND1 B:HIS82 4.7 12.5 1.0

Reference:

N.Goessweiner-Mohr, M.Eder, G.Hofer, C.Fercher, K.Arends, R.Birner-Gruenberger, E.Grohmann, W.Keller. Structure of the Double-Stranded Dna Binding Type IV Secretion Protein Tran From Enterococcus Acta Crystallogr.,Sect.D V. 70 2376 2014.
ISSN: ESSN 1399-0047
PubMed: 25195751
DOI: 10.1107/S1399004714014187
Page generated: Wed Jul 10 22:17:10 2024

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