Bromine in PDB 4r6c: X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science: the X-Ray Crystal Structure of Hen Egg White Lysozyme Cocrystallized with TA6BR12 and Then A Crystal Soaked in K2PTBR6
Enzymatic activity of X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science: the X-Ray Crystal Structure of Hen Egg White Lysozyme Cocrystallized with TA6BR12 and Then A Crystal Soaked in K2PTBR6
All present enzymatic activity of X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science: the X-Ray Crystal Structure of Hen Egg White Lysozyme Cocrystallized with TA6BR12 and Then A Crystal Soaked in K2PTBR6:
3.2.1.17;
Protein crystallography data
The structure of X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science: the X-Ray Crystal Structure of Hen Egg White Lysozyme Cocrystallized with TA6BR12 and Then A Crystal Soaked in K2PTBR6, PDB code: 4r6c
was solved by
J.R.Helliwell,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
22.36 /
1.70
|
Space group
|
P 43 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
79.070,
79.070,
37.235,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
18 /
23
|
Other elements in 4r6c:
The structure of X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science: the X-Ray Crystal Structure of Hen Egg White Lysozyme Cocrystallized with TA6BR12 and Then A Crystal Soaked in K2PTBR6 also contains other interesting chemical elements:
Bromine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
31;
Binding sites:
The binding sites of Bromine atom in the X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science: the X-Ray Crystal Structure of Hen Egg White Lysozyme Cocrystallized with TA6BR12 and Then A Crystal Soaked in K2PTBR6
(pdb code 4r6c). This binding sites where shown within
5.0 Angstroms radius around Bromine atom.
In total 31 binding sites of Bromine where determined in the
X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science: the X-Ray Crystal Structure of Hen Egg White Lysozyme Cocrystallized with TA6BR12 and Then A Crystal Soaked in K2PTBR6, PDB code: 4r6c:
Jump to Bromine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Bromine binding site 1 out
of 31 in 4r6c
Go back to
Bromine Binding Sites List in 4r6c
Bromine binding site 1 out
of 31 in the X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science: the X-Ray Crystal Structure of Hen Egg White Lysozyme Cocrystallized with TA6BR12 and Then A Crystal Soaked in K2PTBR6
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 1 of X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science: the X-Ray Crystal Structure of Hen Egg White Lysozyme Cocrystallized with TA6BR12 and Then A Crystal Soaked in K2PTBR6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br201
b:33.1
occ:0.43
|
BR1
|
A:TBR201
|
0.0
|
33.1
|
0.4
|
TA2
|
A:TBR201
|
2.5
|
29.3
|
0.4
|
TA1
|
A:TBR201
|
2.6
|
26.9
|
0.4
|
BR5
|
A:TBR201
|
3.5
|
28.4
|
0.4
|
BR4
|
A:TBR201
|
3.6
|
27.4
|
0.4
|
BR2
|
A:TBR201
|
3.6
|
30.9
|
0.4
|
BRC
|
A:TBR201
|
3.7
|
30.4
|
0.4
|
TA3
|
A:TBR201
|
4.1
|
26.2
|
0.4
|
TA6
|
A:TBR201
|
4.1
|
24.0
|
0.4
|
|
Bromine binding site 2 out
of 31 in 4r6c
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Bromine Binding Sites List in 4r6c
Bromine binding site 2 out
of 31 in the X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science: the X-Ray Crystal Structure of Hen Egg White Lysozyme Cocrystallized with TA6BR12 and Then A Crystal Soaked in K2PTBR6
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 2 of X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science: the X-Ray Crystal Structure of Hen Egg White Lysozyme Cocrystallized with TA6BR12 and Then A Crystal Soaked in K2PTBR6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br201
b:30.9
occ:0.43
|
BR2
|
A:TBR201
|
0.0
|
30.9
|
0.4
|
TA3
|
A:TBR201
|
2.6
|
26.2
|
0.4
|
TA1
|
A:TBR201
|
2.6
|
26.9
|
0.4
|
BR3
|
A:TBR201
|
3.4
|
22.5
|
0.4
|
BR
|
A:BR205
|
3.6
|
31.4
|
0.4
|
BR6
|
A:TBR201
|
3.6
|
25.5
|
0.4
|
BR1
|
A:TBR201
|
3.6
|
33.1
|
0.4
|
BR5
|
A:TBR201
|
3.7
|
28.4
|
0.4
|
TA5
|
A:TBR201
|
4.1
|
23.4
|
0.4
|
TA2
|
A:TBR201
|
4.2
|
29.3
|
0.4
|
O
|
A:HOH381
|
4.9
|
14.3
|
1.0
|
|
Bromine binding site 3 out
of 31 in 4r6c
Go back to
Bromine Binding Sites List in 4r6c
Bromine binding site 3 out
of 31 in the X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science: the X-Ray Crystal Structure of Hen Egg White Lysozyme Cocrystallized with TA6BR12 and Then A Crystal Soaked in K2PTBR6
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 3 of X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science: the X-Ray Crystal Structure of Hen Egg White Lysozyme Cocrystallized with TA6BR12 and Then A Crystal Soaked in K2PTBR6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br201
b:22.5
occ:0.43
|
BR3
|
A:TBR201
|
0.0
|
22.5
|
0.4
|
TA5
|
A:TBR201
|
2.5
|
23.4
|
0.4
|
TA1
|
A:TBR201
|
2.6
|
26.9
|
0.4
|
BR2
|
A:TBR201
|
3.4
|
30.9
|
0.4
|
BRB
|
A:TBR201
|
3.5
|
24.6
|
0.4
|
BR4
|
A:TBR201
|
3.7
|
27.4
|
0.4
|
BR6
|
A:TBR201
|
3.8
|
25.5
|
0.4
|
OXT
|
A:LEU129
|
4.0
|
77.4
|
1.0
|
TA3
|
A:TBR201
|
4.0
|
26.2
|
0.4
|
TA6
|
A:TBR201
|
4.2
|
24.0
|
0.4
|
|
Bromine binding site 4 out
of 31 in 4r6c
Go back to
Bromine Binding Sites List in 4r6c
Bromine binding site 4 out
of 31 in the X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science: the X-Ray Crystal Structure of Hen Egg White Lysozyme Cocrystallized with TA6BR12 and Then A Crystal Soaked in K2PTBR6
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 4 of X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science: the X-Ray Crystal Structure of Hen Egg White Lysozyme Cocrystallized with TA6BR12 and Then A Crystal Soaked in K2PTBR6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br201
b:27.4
occ:0.43
|
BR4
|
A:TBR201
|
0.0
|
27.4
|
0.4
|
TA6
|
A:TBR201
|
2.6
|
24.0
|
0.4
|
TA1
|
A:TBR201
|
2.6
|
26.9
|
0.4
|
OE1
|
A:GLN121
|
3.3
|
48.5
|
1.0
|
BRB
|
A:TBR201
|
3.6
|
24.6
|
0.4
|
BRC
|
A:TBR201
|
3.6
|
30.4
|
0.4
|
BR1
|
A:TBR201
|
3.6
|
33.1
|
0.4
|
BR3
|
A:TBR201
|
3.7
|
22.5
|
0.4
|
TA2
|
A:TBR201
|
4.1
|
29.3
|
0.4
|
TA5
|
A:TBR201
|
4.2
|
23.4
|
0.4
|
CD
|
A:GLN121
|
4.5
|
44.2
|
1.0
|
|
Bromine binding site 5 out
of 31 in 4r6c
Go back to
Bromine Binding Sites List in 4r6c
Bromine binding site 5 out
of 31 in the X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science: the X-Ray Crystal Structure of Hen Egg White Lysozyme Cocrystallized with TA6BR12 and Then A Crystal Soaked in K2PTBR6
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 5 of X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science: the X-Ray Crystal Structure of Hen Egg White Lysozyme Cocrystallized with TA6BR12 and Then A Crystal Soaked in K2PTBR6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br201
b:28.4
occ:0.43
|
BR5
|
A:TBR201
|
0.0
|
28.4
|
0.4
|
BR
|
A:BR205
|
2.3
|
31.4
|
0.4
|
TA2
|
A:TBR201
|
2.5
|
29.3
|
0.4
|
TA3
|
A:TBR201
|
2.6
|
26.2
|
0.4
|
BR9
|
A:TBR201
|
3.4
|
26.1
|
0.4
|
BR1
|
A:TBR201
|
3.5
|
33.1
|
0.4
|
BRA
|
A:TBR201
|
3.7
|
25.3
|
0.4
|
BR2
|
A:TBR201
|
3.7
|
30.9
|
0.4
|
TA4
|
A:TBR201
|
4.1
|
22.2
|
0.4
|
TA1
|
A:TBR201
|
4.1
|
26.9
|
0.4
|
BR6
|
A:TBR201
|
4.9
|
25.5
|
0.4
|
|
Bromine binding site 6 out
of 31 in 4r6c
Go back to
Bromine Binding Sites List in 4r6c
Bromine binding site 6 out
of 31 in the X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science: the X-Ray Crystal Structure of Hen Egg White Lysozyme Cocrystallized with TA6BR12 and Then A Crystal Soaked in K2PTBR6
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 6 of X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science: the X-Ray Crystal Structure of Hen Egg White Lysozyme Cocrystallized with TA6BR12 and Then A Crystal Soaked in K2PTBR6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br201
b:25.5
occ:0.43
|
BR6
|
A:TBR201
|
0.0
|
25.5
|
0.4
|
TA3
|
A:TBR201
|
2.4
|
26.2
|
0.4
|
TA5
|
A:TBR201
|
2.7
|
23.4
|
0.4
|
NZ
|
A:LYS13
|
2.8
|
37.3
|
1.0
|
BRA
|
A:TBR201
|
3.2
|
25.3
|
0.4
|
OXT
|
A:LEU129
|
3.3
|
77.4
|
1.0
|
BR
|
A:BR205
|
3.3
|
31.4
|
0.4
|
CE
|
A:LYS13
|
3.4
|
37.9
|
1.0
|
BR7
|
A:TBR201
|
3.5
|
21.1
|
0.4
|
BR2
|
A:TBR201
|
3.6
|
30.9
|
0.4
|
BR3
|
A:TBR201
|
3.8
|
22.5
|
0.4
|
TA4
|
A:TBR201
|
3.9
|
22.2
|
0.4
|
C
|
A:LEU129
|
4.2
|
57.8
|
1.0
|
TA1
|
A:TBR201
|
4.3
|
26.9
|
0.4
|
O
|
A:HOH381
|
4.5
|
14.3
|
1.0
|
O
|
A:LEU129
|
4.6
|
60.1
|
1.0
|
CD
|
A:LYS13
|
4.6
|
31.6
|
1.0
|
CL
|
A:CL218
|
4.9
|
27.2
|
1.0
|
BR5
|
A:TBR201
|
4.9
|
28.4
|
0.4
|
|
Bromine binding site 7 out
of 31 in 4r6c
Go back to
Bromine Binding Sites List in 4r6c
Bromine binding site 7 out
of 31 in the X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science: the X-Ray Crystal Structure of Hen Egg White Lysozyme Cocrystallized with TA6BR12 and Then A Crystal Soaked in K2PTBR6
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 7 of X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science: the X-Ray Crystal Structure of Hen Egg White Lysozyme Cocrystallized with TA6BR12 and Then A Crystal Soaked in K2PTBR6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br201
b:21.1
occ:0.43
|
BR7
|
A:TBR201
|
0.0
|
21.1
|
0.4
|
TA5
|
A:TBR201
|
2.6
|
23.4
|
0.4
|
TA4
|
A:TBR201
|
2.6
|
22.2
|
0.4
|
OD2
|
A:ASP18
|
3.2
|
26.0
|
1.0
|
CD
|
A:LYS13
|
3.3
|
31.6
|
1.0
|
CE
|
A:LYS13
|
3.4
|
37.9
|
1.0
|
BR6
|
A:TBR201
|
3.5
|
25.5
|
0.4
|
BRB
|
A:TBR201
|
3.5
|
24.6
|
0.4
|
BR8
|
A:TBR201
|
3.6
|
21.6
|
0.4
|
CD2
|
A:LEU25
|
3.7
|
19.7
|
1.0
|
BRA
|
A:TBR201
|
3.7
|
25.3
|
0.4
|
CB
|
A:LEU129
|
3.8
|
44.4
|
1.0
|
NZ
|
A:LYS13
|
3.9
|
37.3
|
1.0
|
CG
|
A:ASP18
|
4.1
|
23.3
|
1.0
|
CD1
|
A:LEU129
|
4.1
|
46.5
|
1.0
|
CG
|
A:LYS13
|
4.1
|
25.6
|
1.0
|
TA3
|
A:TBR201
|
4.2
|
26.2
|
0.4
|
TA6
|
A:TBR201
|
4.2
|
24.0
|
0.4
|
OXT
|
A:LEU129
|
4.3
|
77.4
|
1.0
|
CG
|
A:LEU129
|
4.4
|
44.9
|
1.0
|
CD2
|
A:LEU129
|
4.6
|
43.1
|
1.0
|
C
|
A:LEU129
|
4.7
|
57.8
|
1.0
|
CB
|
A:LYS13
|
4.8
|
21.4
|
1.0
|
CB
|
A:ASP18
|
4.8
|
20.6
|
1.0
|
CA
|
A:LEU129
|
4.9
|
47.4
|
1.0
|
OD1
|
A:ASP18
|
4.9
|
26.4
|
1.0
|
CB
|
A:LEU25
|
4.9
|
15.2
|
1.0
|
CG
|
A:LEU25
|
5.0
|
16.2
|
1.0
|
|
Bromine binding site 8 out
of 31 in 4r6c
Go back to
Bromine Binding Sites List in 4r6c
Bromine binding site 8 out
of 31 in the X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science: the X-Ray Crystal Structure of Hen Egg White Lysozyme Cocrystallized with TA6BR12 and Then A Crystal Soaked in K2PTBR6
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 8 of X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science: the X-Ray Crystal Structure of Hen Egg White Lysozyme Cocrystallized with TA6BR12 and Then A Crystal Soaked in K2PTBR6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br201
b:21.6
occ:0.43
|
BR8
|
A:TBR201
|
0.0
|
21.6
|
0.4
|
TA4
|
A:TBR201
|
2.6
|
22.2
|
0.4
|
TA6
|
A:TBR201
|
2.6
|
24.0
|
0.4
|
OD1
|
A:ASP18
|
3.0
|
26.4
|
1.0
|
OD2
|
A:ASP18
|
3.2
|
26.0
|
1.0
|
CD1
|
A:ILE124
|
3.2
|
30.2
|
1.0
|
CG
|
A:ASP18
|
3.4
|
23.3
|
1.0
|
CB
|
A:LEU25
|
3.4
|
15.2
|
1.0
|
BR9
|
A:TBR201
|
3.6
|
26.1
|
0.4
|
BRC
|
A:TBR201
|
3.6
|
30.4
|
0.4
|
BR7
|
A:TBR201
|
3.6
|
21.1
|
0.4
|
BRB
|
A:TBR201
|
3.6
|
24.6
|
0.4
|
N
|
A:LEU25
|
3.8
|
13.3
|
1.0
|
TA2
|
A:TBR201
|
4.2
|
29.3
|
0.4
|
CL
|
A:CL212
|
4.2
|
21.5
|
1.0
|
TA5
|
A:TBR201
|
4.2
|
23.4
|
0.4
|
CA
|
A:LEU25
|
4.2
|
13.6
|
1.0
|
CD2
|
A:LEU25
|
4.3
|
19.7
|
1.0
|
CG
|
A:LEU25
|
4.6
|
16.2
|
1.0
|
CB
|
A:SER24
|
4.7
|
15.4
|
1.0
|
CG1
|
A:ILE124
|
4.8
|
24.7
|
1.0
|
C
|
A:SER24
|
4.8
|
13.8
|
1.0
|
CB
|
A:ASP18
|
4.8
|
20.6
|
1.0
|
N
|
A:GLY26
|
4.8
|
12.6
|
1.0
|
CA
|
A:SER24
|
5.0
|
13.8
|
1.0
|
|
Bromine binding site 9 out
of 31 in 4r6c
Go back to
Bromine Binding Sites List in 4r6c
Bromine binding site 9 out
of 31 in the X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science: the X-Ray Crystal Structure of Hen Egg White Lysozyme Cocrystallized with TA6BR12 and Then A Crystal Soaked in K2PTBR6
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 9 of X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science: the X-Ray Crystal Structure of Hen Egg White Lysozyme Cocrystallized with TA6BR12 and Then A Crystal Soaked in K2PTBR6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br201
b:26.1
occ:0.43
|
BR9
|
A:TBR201
|
0.0
|
26.1
|
0.4
|
TA4
|
A:TBR201
|
2.5
|
22.2
|
0.4
|
TA2
|
A:TBR201
|
2.6
|
29.3
|
0.4
|
OD2
|
A:ASP18
|
2.8
|
26.0
|
1.0
|
ND2
|
A:ASN19
|
2.9
|
42.1
|
1.0
|
OD1
|
A:ASP18
|
3.0
|
26.4
|
1.0
|
CG
|
A:ASP18
|
3.2
|
23.3
|
1.0
|
BR5
|
A:TBR201
|
3.4
|
28.4
|
0.4
|
BR8
|
A:TBR201
|
3.6
|
21.6
|
0.4
|
BRC
|
A:TBR201
|
3.6
|
30.4
|
0.4
|
BRA
|
A:TBR201
|
3.6
|
25.3
|
0.4
|
TA3
|
A:TBR201
|
4.0
|
26.2
|
0.4
|
TA6
|
A:TBR201
|
4.1
|
24.0
|
0.4
|
CG
|
A:ASN19
|
4.1
|
33.2
|
1.0
|
BR
|
A:BR205
|
4.4
|
31.4
|
0.4
|
CB
|
A:ASP18
|
4.6
|
20.6
|
1.0
|
CB
|
A:ASN19
|
4.7
|
24.1
|
1.0
|
N
|
A:ASN19
|
4.8
|
16.1
|
1.0
|
C
|
A:ASP18
|
4.9
|
18.9
|
1.0
|
|
Bromine binding site 10 out
of 31 in 4r6c
Go back to
Bromine Binding Sites List in 4r6c
Bromine binding site 10 out
of 31 in the X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science: the X-Ray Crystal Structure of Hen Egg White Lysozyme Cocrystallized with TA6BR12 and Then A Crystal Soaked in K2PTBR6
Mono view
Stereo pair view
|
A full contact list of Bromine with other atoms in the Br binding
site number 10 of X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science: the X-Ray Crystal Structure of Hen Egg White Lysozyme Cocrystallized with TA6BR12 and Then A Crystal Soaked in K2PTBR6 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Br201
b:25.3
occ:0.43
|
BRA
|
A:TBR201
|
0.0
|
25.3
|
0.4
|
BR
|
A:BR205
|
2.4
|
31.4
|
0.4
|
TA4
|
A:TBR201
|
2.7
|
22.2
|
0.4
|
TA3
|
A:TBR201
|
2.7
|
26.2
|
0.4
|
OD2
|
A:ASP18
|
2.7
|
26.0
|
1.0
|
BR6
|
A:TBR201
|
3.2
|
25.5
|
0.4
|
BR9
|
A:TBR201
|
3.6
|
26.1
|
0.4
|
CE
|
A:LYS13
|
3.7
|
37.9
|
1.0
|
BR7
|
A:TBR201
|
3.7
|
21.1
|
0.4
|
BR5
|
A:TBR201
|
3.7
|
28.4
|
0.4
|
CG
|
A:ASP18
|
3.9
|
23.3
|
1.0
|
TA5
|
A:TBR201
|
4.2
|
23.4
|
0.4
|
TA2
|
A:TBR201
|
4.3
|
29.3
|
0.4
|
NZ
|
A:LYS13
|
4.3
|
37.3
|
1.0
|
CB
|
A:ASP18
|
4.5
|
20.6
|
1.0
|
CD
|
A:LYS13
|
4.6
|
31.6
|
1.0
|
OD1
|
A:ASP18
|
4.8
|
26.4
|
1.0
|
CG
|
A:LYS13
|
4.9
|
25.6
|
1.0
|
|
Reference:
J.R.Helliwell,
A.Brink,
S.Kaenket,
V.L.Starkey,
S.W.Tanley.
X-Ray Diffraction in Temporally and Spatially Resolved Biomolecular Science. Faraday Discuss 2015.
PubMed: 25605312
DOI: 10.1039/C4FD00166D
Page generated: Wed Jul 10 22:22:24 2024
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