Atomistry » Bromine » PDB 4x6i-4z8b » 4xsn
Atomistry »
  Bromine »
    PDB 4x6i-4z8b »
      4xsn »

Bromine in PDB 4xsn: Copper(II) Bound to the Z-Dna Form of D(Cgcgcg)

Protein crystallography data

The structure of Copper(II) Bound to the Z-Dna Form of D(Cgcgcg), PDB code: 4xsn was solved by M.Rohner, A.Medina-Molner, B.Spingler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 17.36 / 1.45
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 18.799, 29.077, 43.278, 90.00, 90.00, 90.00
R / Rfree (%) 12 / 15.7

Other elements in 4xsn:

The structure of Copper(II) Bound to the Z-Dna Form of D(Cgcgcg) also contains other interesting chemical elements:

Copper (Cu) 1 atom

Bromine Binding Sites:

The binding sites of Bromine atom in the Copper(II) Bound to the Z-Dna Form of D(Cgcgcg) (pdb code 4xsn). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Copper(II) Bound to the Z-Dna Form of D(Cgcgcg), PDB code: 4xsn:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in 4xsn

Go back to Bromine Binding Sites List in 4xsn
Bromine binding site 1 out of 2 in the Copper(II) Bound to the Z-Dna Form of D(Cgcgcg)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Copper(II) Bound to the Z-Dna Form of D(Cgcgcg) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br2

b:23.1
occ:1.00
BR A:BGM2 0.0 23.1 1.0
C8 A:BGM2 1.9 17.0 1.0
N7 A:BGM2 2.8 17.0 1.0
N9 A:BGM2 2.8 15.3 1.0
C1' A:BGM2 3.3 15.8 1.0
O A:HOH119 3.6 18.8 1.0
O B:HOH238 3.9 27.5 1.0
C5 A:BGM2 3.9 13.3 1.0
C4 A:BGM2 4.0 15.7 1.0
O4' A:BGM2 4.1 15.4 1.0
O A:HOH123 4.2 17.2 1.0
C2' A:BGM2 4.5 16.5 1.0

Bromine binding site 2 out of 2 in 4xsn

Go back to Bromine Binding Sites List in 4xsn
Bromine binding site 2 out of 2 in the Copper(II) Bound to the Z-Dna Form of D(Cgcgcg)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Copper(II) Bound to the Z-Dna Form of D(Cgcgcg) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br2

b:17.5
occ:1.00
BR B:BGM2 0.0 17.5 1.0
C8 B:BGM2 1.9 14.6 1.0
N7 B:BGM2 2.8 16.5 1.0
N9 B:BGM2 2.9 13.5 1.0
C1' B:BGM2 3.3 14.7 1.0
O B:HOH217 3.7 47.4 1.0
C5 B:BGM2 3.9 13.2 1.0
C4 B:BGM2 4.0 13.4 1.0
O4' B:BGM2 4.2 14.0 1.0
C2' B:BGM2 4.5 14.8 1.0

Reference:

M.Rohner, A.Medina-Molner, B.Spingler. N,N,O and N,O,N Meridional Cis Coordination of Two Guanines to Copper(II) By D(Cgcgcg)2. Inorg.Chem. V. 55 6130 2016.
ISSN: ISSN 0020-1669
PubMed: 27266259
DOI: 10.1021/ACS.INORGCHEM.6B00672
Page generated: Wed Jul 10 23:01:27 2024

Last articles

Cl in 4NHT
Cl in 4NO7
Cl in 4NML
Cl in 4NN3
Cl in 4NMW
Cl in 4NM7
Cl in 4NM5
Cl in 4NM3
Cl in 4NM0
Cl in 4NHQ
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy