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Bromine in PDB 4zc0: Structure of A Dodecameric Bacterial Helicase

Enzymatic activity of Structure of A Dodecameric Bacterial Helicase

All present enzymatic activity of Structure of A Dodecameric Bacterial Helicase:
3.6.4.12;

Protein crystallography data

The structure of Structure of A Dodecameric Bacterial Helicase, PDB code: 4zc0 was solved by A.Bazin, M.V.Cherrier, I.Gutsche, J.Timmins, L.Terradot, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.25 / 6.70
Space group I 21 3
Cell size a, b, c (Å), α, β, γ (°) 283.467, 283.467, 283.467, 90.00, 90.00, 90.00
R / Rfree (%) 25.8 / 29.9

Other elements in 4zc0:

The structure of Structure of A Dodecameric Bacterial Helicase also contains other interesting chemical elements:

Tantalum (Ta) 6 atoms

Bromine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Bromine atom in the Structure of A Dodecameric Bacterial Helicase (pdb code 4zc0). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 12 binding sites of Bromine where determined in the Structure of A Dodecameric Bacterial Helicase, PDB code: 4zc0:
Jump to Bromine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Bromine binding site 1 out of 12 in 4zc0

Go back to Bromine Binding Sites List in 4zc0
Bromine binding site 1 out of 12 in the Structure of A Dodecameric Bacterial Helicase


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Structure of A Dodecameric Bacterial Helicase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br501

b:0.0
occ:0.49
 BR1 B:TBR501 0.0 0.0 0.5
TA2 B:TBR501 2.6 0.0 0.5
TA1 B:TBR501 2.6 0.0 0.5
CB B:SER38 3.4 0.4 1.0
BR2 B:TBR501 3.6 0.0 0.5
BR5 B:TBR501 3.6 0.0 0.5
BRC B:TBR501 3.6 0.0 0.5
BR4 B:TBR501 3.7 0.0 0.5
CA B:SER38 4.0 0.4 1.0
TA3 B:TBR501 4.2 0.0 0.5
TA6 B:TBR501 4.2 0.0 0.5
N B:SER38 4.5 0.4 1.0
OG B:SER38 4.5 0.4 1.0

Bromine binding site 2 out of 12 in 4zc0

Go back to Bromine Binding Sites List in 4zc0
Bromine binding site 2 out of 12 in the Structure of A Dodecameric Bacterial Helicase


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Structure of A Dodecameric Bacterial Helicase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br501

b:0.0
occ:0.49
 BR2 B:TBR501 0.0 0.0 0.5
TA1 B:TBR501 2.6 0.0 0.5
TA3 B:TBR501 2.6 0.0 0.5
BR1 B:TBR501 3.6 0.0 0.5
BR3 B:TBR501 3.6 0.0 0.5
BR5 B:TBR501 3.6 0.0 0.5
BR6 B:TBR501 3.6 0.0 0.5
TA2 B:TBR501 4.2 0.0 0.5
TA5 B:TBR501 4.2 0.0 0.5

Bromine binding site 3 out of 12 in 4zc0

Go back to Bromine Binding Sites List in 4zc0
Bromine binding site 3 out of 12 in the Structure of A Dodecameric Bacterial Helicase


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Structure of A Dodecameric Bacterial Helicase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br501

b:0.0
occ:0.49
 BR3 B:TBR501 0.0 0.0 0.5
TA1 B:TBR501 2.6 0.0 0.5
TA5 B:TBR501 2.6 0.0 0.5
BR6 B:TBR501 3.6 0.0 0.5
BR4 B:TBR501 3.6 0.0 0.5
BRB B:TBR501 3.6 0.0 0.5
BR2 B:TBR501 3.6 0.0 0.5
TA6 B:TBR501 4.2 0.0 0.5
TA3 B:TBR501 4.2 0.0 0.5

Bromine binding site 4 out of 12 in 4zc0

Go back to Bromine Binding Sites List in 4zc0
Bromine binding site 4 out of 12 in the Structure of A Dodecameric Bacterial Helicase


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Structure of A Dodecameric Bacterial Helicase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br501

b:0.0
occ:0.49
 BR4 B:TBR501 0.0 0.0 0.5
TA6 B:TBR501 2.6 0.0 0.5
TA1 B:TBR501 2.6 0.0 0.5
BR3 B:TBR501 3.6 0.0 0.5
BRB B:TBR501 3.6 0.0 0.5
BRC B:TBR501 3.7 0.0 0.5
BR1 B:TBR501 3.7 0.0 0.5
TA5 B:TBR501 4.2 0.0 0.5
TA2 B:TBR501 4.2 0.0 0.5

Bromine binding site 5 out of 12 in 4zc0

Go back to Bromine Binding Sites List in 4zc0
Bromine binding site 5 out of 12 in the Structure of A Dodecameric Bacterial Helicase


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 5 of Structure of A Dodecameric Bacterial Helicase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br501

b:0.0
occ:0.49
 BR5 B:TBR501 0.0 0.0 0.5
TA2 B:TBR501 2.6 0.0 0.5
TA3 B:TBR501 2.6 0.0 0.5
OE2 B:GLU50 2.8 0.7 1.0
BR1 B:TBR501 3.6 0.0 0.5
BR9 B:TBR501 3.6 0.0 0.5
BRA B:TBR501 3.6 0.0 0.5
BR2 B:TBR501 3.6 0.0 0.5
CD B:GLU50 3.9 0.7 1.0
TA1 B:TBR501 4.2 0.0 0.5
TA4 B:TBR501 4.2 0.0 0.5
OE1 B:GLU50 4.2 0.7 1.0
CB B:PRO37 4.9 0.7 1.0

Bromine binding site 6 out of 12 in 4zc0

Go back to Bromine Binding Sites List in 4zc0
Bromine binding site 6 out of 12 in the Structure of A Dodecameric Bacterial Helicase


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 6 of Structure of A Dodecameric Bacterial Helicase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br501

b:0.0
occ:0.49
 BR6 B:TBR501 0.0 0.0 0.5
TA5 B:TBR501 2.6 0.0 0.5
TA3 B:TBR501 2.6 0.0 0.5
BR3 B:TBR501 3.6 0.0 0.5
BR7 B:TBR501 3.6 0.0 0.5
BR2 B:TBR501 3.6 0.0 0.5
BRA B:TBR501 3.7 0.0 0.5
TA1 B:TBR501 4.1 0.0 0.5
TA4 B:TBR501 4.2 0.0 0.5

Bromine binding site 7 out of 12 in 4zc0

Go back to Bromine Binding Sites List in 4zc0
Bromine binding site 7 out of 12 in the Structure of A Dodecameric Bacterial Helicase


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 7 of Structure of A Dodecameric Bacterial Helicase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br501

b:0.0
occ:0.49
 BR7 B:TBR501 0.0 0.0 0.5
TA5 B:TBR501 2.6 0.0 0.5
TA4 B:TBR501 2.6 0.0 0.5
CD2 B:LEU47 3.4 0.1 1.0
CD B:LYS75 3.5 0.7 1.0
BR8 B:TBR501 3.6 0.0 0.5
BRB B:TBR501 3.6 0.0 0.5
BR6 B:TBR501 3.6 0.0 0.5
BRA B:TBR501 3.7 0.0 0.5
CD1 B:LEU47 3.8 0.1 1.0
CG B:LEU47 4.1 0.1 1.0
TA6 B:TBR501 4.2 0.0 0.5
TA3 B:TBR501 4.2 0.0 0.5
CE B:LYS75 4.3 0.7 1.0
CB B:LYS75 4.6 0.7 1.0
CG B:LYS75 4.7 0.7 1.0
OD2 B:ASP74 4.9 0.0 1.0

Bromine binding site 8 out of 12 in 4zc0

Go back to Bromine Binding Sites List in 4zc0
Bromine binding site 8 out of 12 in the Structure of A Dodecameric Bacterial Helicase


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 8 of Structure of A Dodecameric Bacterial Helicase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br501

b:0.0
occ:0.49
 BR8 B:TBR501 0.0 0.0 0.5
CD1 B:LEU47 1.6 0.1 1.0
TA4 B:TBR501 2.6 0.0 0.5
TA6 B:TBR501 2.6 0.0 0.5
CG B:LEU47 3.0 0.1 1.0
O B:PRO43 3.5 0.7 1.0
BR7 B:TBR501 3.6 0.0 0.5
BR9 B:TBR501 3.6 0.0 0.5
BRC B:TBR501 3.6 0.0 0.5
BRB B:TBR501 3.6 0.0 0.5
CB B:PRO43 3.7 0.7 1.0
CD2 B:LEU47 3.8 0.1 1.0
CA B:PRO43 3.8 0.7 1.0
C B:PRO43 3.9 0.7 1.0
CE B:LYS75 4.2 0.7 1.0
TA5 B:TBR501 4.2 0.0 0.5
CB B:LEU47 4.2 0.1 1.0
TA2 B:TBR501 4.2 0.0 0.5
N B:LEU47 4.3 0.1 1.0
CD B:LYS75 4.5 0.7 1.0
CA B:LEU47 4.7 0.1 1.0
CG B:PRO43 4.9 0.7 1.0

Bromine binding site 9 out of 12 in 4zc0

Go back to Bromine Binding Sites List in 4zc0
Bromine binding site 9 out of 12 in the Structure of A Dodecameric Bacterial Helicase


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 9 of Structure of A Dodecameric Bacterial Helicase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br501

b:0.0
occ:0.49
 BR9 B:TBR501 0.0 0.0 0.5
TA4 B:TBR501 2.6 0.0 0.5
TA2 B:TBR501 2.6 0.0 0.5
CG B:LEU47 3.0 0.1 1.0
CD1 B:LEU47 3.2 0.1 1.0
OE2 B:GLU50 3.4 0.7 1.0
CA B:LEU47 3.5 0.1 1.0
BRC B:TBR501 3.6 0.0 0.5
BRA B:TBR501 3.6 0.0 0.5
BR5 B:TBR501 3.6 0.0 0.5
BR8 B:TBR501 3.6 0.0 0.5
CD B:GLU50 3.6 0.7 1.0
N B:LEU47 3.6 0.1 1.0
OE1 B:GLU50 3.7 0.7 1.0
CB B:LEU47 3.8 0.1 1.0
C B:GLY46 4.0 0.6 1.0
CB B:PRO37 4.0 0.7 1.0
CD2 B:LEU47 4.1 0.1 1.0
O B:GLY46 4.1 0.6 1.0
TA3 B:TBR501 4.2 0.0 0.5
TA6 B:TBR501 4.2 0.0 0.5
CB B:GLU50 4.4 0.7 1.0
CG B:GLU50 4.6 0.7 1.0
O B:PRO37 4.7 0.7 1.0
CA B:GLY46 4.8 0.6 1.0
C B:LEU47 4.9 0.1 1.0
C B:PRO37 4.9 0.7 1.0

Bromine binding site 10 out of 12 in 4zc0

Go back to Bromine Binding Sites List in 4zc0
Bromine binding site 10 out of 12 in the Structure of A Dodecameric Bacterial Helicase


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 10 of Structure of A Dodecameric Bacterial Helicase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br501

b:0.0
occ:0.49
 BRA B:TBR501 0.0 0.0 0.5
TA3 B:TBR501 2.6 0.0 0.5
TA4 B:TBR501 2.6 0.0 0.5
OE1 B:GLU50 3.3 0.7 1.0
BR9 B:TBR501 3.6 0.0 0.5
BR5 B:TBR501 3.6 0.0 0.5
BR6 B:TBR501 3.7 0.0 0.5
BR7 B:TBR501 3.7 0.0 0.5
CD2 B:LEU47 3.7 0.1 1.0
CG B:LEU47 4.0 0.1 1.0
OE2 B:GLU50 4.1 0.7 1.0
CD B:GLU50 4.1 0.7 1.0
TA2 B:TBR501 4.1 0.0 0.5
TA5 B:TBR501 4.2 0.0 0.5
CD1 B:LEU47 4.7 0.1 1.0
OD2 B:ASP74 4.9 0.0 1.0

Reference:

A.Bazin, M.V.Cherrier, I.Gutsche, J.Timmins, L.Terradot. Structure and Primase-Mediated Activation of A Bacterial Dodecameric Replicative Helicase. Nucleic Acids Res. V. 43 8564 2015.
ISSN: ESSN 1362-4962
PubMed: 26264665
DOI: 10.1093/NAR/GKV792
Page generated: Wed Jul 10 23:11:21 2024

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