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Bromine in PDB 5dnj: Mouse Polo-Box Domain and Peptide Analog 702

Enzymatic activity of Mouse Polo-Box Domain and Peptide Analog 702

All present enzymatic activity of Mouse Polo-Box Domain and Peptide Analog 702:
2.7.11.21;

Protein crystallography data

The structure of Mouse Polo-Box Domain and Peptide Analog 702, PDB code: 5dnj was solved by S.Namgoong, Y.H.Han, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.70 / 2.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 57.149, 59.989, 67.040, 90.00, 90.00, 90.00
R / Rfree (%) 19.6 / 27.7

Bromine Binding Sites:

The binding sites of Bromine atom in the Mouse Polo-Box Domain and Peptide Analog 702 (pdb code 5dnj). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Mouse Polo-Box Domain and Peptide Analog 702, PDB code: 5dnj:

Bromine binding site 1 out of 1 in 5dnj

Go back to Bromine Binding Sites List in 5dnj
Bromine binding site 1 out of 1 in the Mouse Polo-Box Domain and Peptide Analog 702


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Mouse Polo-Box Domain and Peptide Analog 702 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br1

b:0.5
occ:1.00
BR B:7071 0.0 0.5 1.0
C7 B:7071 2.0 60.8 1.0
C6 B:7071 2.8 50.7 1.0
C8 B:7071 3.1 52.2 1.0
O3 B:7071 3.3 53.5 1.0
C5 B:7071 4.2 42.2 1.0
C10 B:7071 4.4 46.4 1.0
C9 B:7071 4.6 51.2 1.0
C11 B:7071 4.8 44.6 1.0

Reference:

J.L.Jia, Y.H.Han, H.C.Kim, M.Ahn, J.W.Kwon, Y.Luo, P.Gunasekaran, S.J.Lee, K.S.Lee, J.K.Bang, N.H.Kim, S.Namgoong. Structural Basis For Recognition of EMI2 By Polo-Like Kinase 1 and Development of Peptidomimetics Blocking Oocyte Maturation and Fertilization. Sci Rep V. 5 14626 2015.
ISSN: ESSN 2045-2322
PubMed: 26459104
DOI: 10.1038/SREP14626
Page generated: Wed Jul 10 23:26:10 2024

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