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Bromine in PDB 5dz6: Acyl Transferase From Bacillaene Pks

Enzymatic activity of Acyl Transferase From Bacillaene Pks

All present enzymatic activity of Acyl Transferase From Bacillaene Pks:
2.3.1.39;

Protein crystallography data

The structure of Acyl Transferase From Bacillaene Pks, PDB code: 5dz6 was solved by M.Till, P.R.Race, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.09 / 1.44
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 53.190, 70.430, 76.280, 90.00, 90.00, 90.00
R / Rfree (%) 16.3 / 18.5

Other elements in 5dz6:

The structure of Acyl Transferase From Bacillaene Pks also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Bromine Binding Sites:

The binding sites of Bromine atom in the Acyl Transferase From Bacillaene Pks (pdb code 5dz6). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Acyl Transferase From Bacillaene Pks, PDB code: 5dz6:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in 5dz6

Go back to Bromine Binding Sites List in 5dz6
Bromine binding site 1 out of 2 in the Acyl Transferase From Bacillaene Pks


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Acyl Transferase From Bacillaene Pks within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br302

b:18.8
occ:1.00
N A:GLY19 3.2 15.2 1.0
N A:ASP22 3.5 15.6 1.0
CA A:GLY19 3.5 16.8 1.0
C A:GLY19 3.7 16.5 1.0
CE A:LYS40 3.7 16.8 1.0
CG A:ASP22 3.7 22.6 1.0
N A:PHE21 3.7 10.3 1.0
CB A:PHE21 3.8 13.6 1.0
OD2 A:ASP22 3.9 25.6 1.0
CB A:ASP22 3.9 18.4 1.0
OD1 A:ASP22 4.0 23.9 1.0
O A:GLY19 4.0 20.5 1.0
CD2 A:PHE21 4.0 12.0 1.0
NZ A:LYS40 4.0 17.7 1.0
N A:LEU20 4.1 15.1 1.0
CA A:PHE21 4.1 11.0 1.0
C A:PHE21 4.3 14.3 1.0
C A:SER18 4.3 13.3 1.0
CA A:ASP22 4.4 17.8 1.0
CD A:LYS40 4.4 14.7 1.0
CG A:PHE21 4.4 11.1 1.0
CD1 A:LEU44 4.5 16.9 1.0
O A:GLY17 4.6 13.7 1.0
C A:LEU20 4.6 12.2 1.0
CA A:SER18 4.6 14.9 1.0
CG A:LYS40 4.8 13.2 1.0
CA A:LEU20 5.0 14.2 1.0

Bromine binding site 2 out of 2 in 5dz6

Go back to Bromine Binding Sites List in 5dz6
Bromine binding site 2 out of 2 in the Acyl Transferase From Bacillaene Pks


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Acyl Transferase From Bacillaene Pks within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br303

b:12.2
occ:1.00
O A:HOH665 3.2 30.6 1.0
N A:TYR156 3.5 5.4 1.0
NH1 A:ARG278 3.6 18.7 1.0
NE2 A:GLN157 3.7 16.4 1.0
CB A:ALA154 3.8 6.8 1.0
CB A:ARG278 3.8 7.8 1.0
CB A:TYR156 3.9 7.7 1.0
CD A:PRO155 4.0 7.3 1.0
CG A:ARG278 4.0 9.4 1.0
CG A:GLN157 4.0 10.7 1.0
CA A:TYR156 4.0 6.5 1.0
CD A:ARG278 4.0 11.9 1.0
N A:PRO155 4.1 6.5 1.0
O A:HOH619 4.2 21.8 1.0
C A:TYR156 4.2 6.7 1.0
CD2 A:TYR156 4.3 11.4 1.0
CD A:GLN157 4.4 12.5 1.0
C A:ALA154 4.5 5.7 1.0
C A:PRO155 4.5 6.3 1.0
CB A:PRO155 4.5 7.9 1.0
N A:GLN157 4.6 6.0 1.0
CG A:TYR156 4.6 9.6 1.0
CA A:PRO155 4.6 6.7 1.0
O A:TYR156 4.6 7.8 1.0
CZ A:ARG278 4.7 16.7 1.0
CG A:PRO155 4.8 9.4 1.0
CA A:ALA154 4.8 5.5 1.0
NE A:ARG278 4.9 13.7 1.0
O A:HOH576 4.9 24.4 1.0
CB A:GLN157 5.0 7.1 1.0

Reference:

M.Till, N.J.Burton, T.D.Akrill, M.W.Van Der Kamp, G.E.Baker, M.J.Byrne, R.L.Owen, C.L.Willis, P.R.Race. Architectural Hierarchy of Trans-Acting Enoyl Reductases From Polyunsaturated Fatty Acid and Trans-Acyltransferase Polyketide Synthases To Be Published.
Page generated: Wed Jul 10 23:27:38 2024

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