Bromine in PDB 5ev2: Structure II of Intact U2AF65 Recognizing the 3' Splice Site Signal

Protein crystallography data

The structure of Structure II of Intact U2AF65 Recognizing the 3' Splice Site Signal, PDB code: 5ev2 was solved by A.A.Agrawal, J.L.Jenkins, C.L.Kielkopf, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.57 / 1.86
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 61.469, 115.220, 59.544, 90.00, 90.00, 90.00
R / Rfree (%) 15.1 / 18.8

Bromine Binding Sites:

The binding sites of Bromine atom in the Structure II of Intact U2AF65 Recognizing the 3' Splice Site Signal (pdb code 5ev2). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Structure II of Intact U2AF65 Recognizing the 3' Splice Site Signal, PDB code: 5ev2:

Bromine binding site 1 out of 1 in 5ev2

Go back to Bromine Binding Sites List in 5ev2
Bromine binding site 1 out of 1 in the Structure II of Intact U2AF65 Recognizing the 3' Splice Site Signal


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Structure II of Intact U2AF65 Recognizing the 3' Splice Site Signal within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br8

b:63.4
occ:1.00
BR B:BRU8 0.0 63.4 1.0
C5 B:BRU8 1.9 26.6 1.0
HB2 A:HIS230 2.4 35.9 1.0
C6 B:BRU8 2.9 25.9 1.0
C4 B:BRU8 3.0 25.9 1.0
O4 B:BRU8 3.1 27.2 1.0
CB A:HIS230 3.4 29.9 1.0
H A:HIS230 3.5 25.3 1.0
HD2 A:HIS230 3.7 34.8 1.0
O2 B:DU7 3.7 22.1 1.0
OP2 B:BRU8 3.8 34.0 1.0
C2' B:DU7 3.8 31.5 1.0
HB3 A:HIS230 3.8 35.9 1.0
O3' B:DU7 3.9 26.8 1.0
H A:ASP231 3.9 25.4 1.0
OD2 A:ASP231 4.0 42.2 1.0
CG A:HIS230 4.0 27.1 1.0
C1' B:DU7 4.0 21.3 1.0
CD2 A:HIS230 4.1 29.0 1.0
N A:HIS230 4.1 21.1 1.0
N1 B:BRU8 4.2 30.9 1.0
N3 B:BRU8 4.2 31.3 1.0
CA A:HIS230 4.3 25.3 1.0
CG A:ASP231 4.3 42.2 1.0
OD1 A:ASP231 4.3 42.2 1.0
N A:ASP231 4.4 21.1 1.0
C3' B:DU7 4.4 20.8 1.0
P B:BRU8 4.4 31.1 1.0
C2 B:DU7 4.5 18.6 1.0
HZ A:PHE199 4.5 26.3 1.0
N1 B:DU7 4.7 19.0 1.0
C2 B:BRU8 4.7 30.9 1.0
C A:HIS230 4.7 20.1 1.0
O5' B:BRU8 4.9 25.7 1.0

Reference:

A.A.Agrawal, E.Salsi, R.Chatrikhi, S.Henderson, J.L.Jenkins, M.R.Green, D.N.Ermolenko, C.L.Kielkopf. An Extended U2AF(65)-Rna-Binding Domain Recognizes the 3' Splice Site Signal. Nat Commun V. 7 10950 2016.
ISSN: ESSN 2041-1723
PubMed: 26952537
DOI: 10.1038/NCOMMS10950
Page generated: Sat Dec 12 02:25:56 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy