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Bromine in PDB 5fkq: Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase

Enzymatic activity of Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase

All present enzymatic activity of Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase:
3.2.1.151;

Protein crystallography data

The structure of Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase, PDB code: 5fkq was solved by M.Attia, J.Stepper, G.J.Davies, H.Brumer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 102.82 / 1.71
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 84.002, 94.116, 105.640, 90.00, 103.27, 90.00
R / Rfree (%) 19.248 / 22.462

Other elements in 5fkq:

The structure of Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase also contains other interesting chemical elements:

Potassium (K) 2 atoms

Bromine Binding Sites:

The binding sites of Bromine atom in the Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase (pdb code 5fkq). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase, PDB code: 5fkq:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in 5fkq

Go back to Bromine Binding Sites List in 5fkq
Bromine binding site 1 out of 2 in the Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1766

b:18.2
occ:1.00
 N A:TRP353 3.2 12.8 1.0
K A:K1769 3.5 13.7 1.0
N A:TRP354 3.8 14.0 1.0
CE2 A:TYR329 3.9 12.6 1.0
CD2 A:TYR329 3.9 11.9 1.0
CB A:TRP353 4.0 12.6 1.0
CA A:ALA352 4.0 11.4 1.0
O A:ILE351 4.0 11.3 1.0
CA A:TRP353 4.1 12.4 1.0
C A:ALA352 4.1 11.7 1.0
CD1 A:TRP353 4.2 13.3 1.0
O A:TRP354 4.4 13.7 1.0
C A:TRP353 4.4 13.6 1.0
CG A:TRP353 4.5 12.6 1.0
CB A:TRP354 4.6 17.9 1.0
CA A:TRP354 4.7 15.4 1.0
C A:ILE351 4.7 10.8 1.0
N A:ALA352 4.8 10.5 1.0
O A:HOH2107 4.9 10.5 1.0
CB A:ALA352 4.9 11.1 1.0
O A:TYR329 5.0 11.8 1.0

Bromine binding site 2 out of 2 in 5fkq

Go back to Bromine Binding Sites List in 5fkq
Bromine binding site 2 out of 2 in the Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br1766

b:19.9
occ:1.00
 N B:TRP353 3.3 14.3 1.0
K B:K1772 3.5 14.3 1.0
CD2 B:TYR329 3.9 16.0 1.0
N B:TRP354 3.9 17.4 1.0
CB B:TRP353 3.9 16.3 1.0
CE2 B:TYR329 3.9 16.3 1.0
CA B:ALA352 4.0 12.4 1.0
O B:ILE351 4.0 9.8 1.0
CA B:TRP353 4.1 15.3 1.0
C B:ALA352 4.1 13.3 1.0
CD1 B:TRP353 4.2 15.8 1.0
CG B:TRP353 4.5 16.2 1.0
C B:TRP353 4.5 15.3 1.0
O B:TRP354 4.6 16.5 1.0
O B:HOH2252 4.6 22.3 1.0
CB B:TRP354 4.6 20.5 1.0
C B:ILE351 4.7 10.8 1.0
N B:ALA352 4.8 11.2 1.0
CA B:TRP354 4.8 18.0 1.0
O B:TYR329 4.8 11.9 1.0
CB B:ALA352 4.9 13.2 1.0

Reference:

M.Attia, J.Stepper, G.J.Davies, H.Brumer. Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase From the Soil Saprophyte Cellvibrio Japonicus Unravels the First Step of Xyloglucan Degradation. Febs J. V. 283 1701 2016.
ISSN: ISSN 1742-464X
PubMed: 26929175
DOI: 10.1111/FEBS.13696
Page generated: Wed Jul 10 23:41:27 2024

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