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Bromine in PDB 5fkt: Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase

Enzymatic activity of Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase

All present enzymatic activity of Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase:
3.2.1.151;

Protein crystallography data

The structure of Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase, PDB code: 5fkt was solved by M.Attia, J.Stepper, G.J.Davies, H.Brumer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 69.48 / 1.52
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 84.120, 94.290, 105.560, 90.00, 103.20, 90.00
R / Rfree (%) 16.726 / 19.384

Other elements in 5fkt:

The structure of Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase also contains other interesting chemical elements:

Potassium (K) 2 atoms

Bromine Binding Sites:

The binding sites of Bromine atom in the Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase (pdb code 5fkt). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase, PDB code: 5fkt:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in 5fkt

Go back to Bromine Binding Sites List in 5fkt
Bromine binding site 1 out of 2 in the Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1771

b:14.8
occ:1.00
 N A:TRP353 3.4 11.1 1.0
K A:K1772 3.5 12.1 1.0
N A:TRP354 3.8 11.7 1.0
CB A:TRP353 3.9 12.7 1.0
CE2 A:TYR329 4.0 14.8 1.0
CD2 A:TYR329 4.0 14.2 1.0
CA A:ALA352 4.0 11.8 1.0
O A:ILE351 4.0 9.4 1.0
CA A:TRP353 4.1 11.8 1.0
C A:ALA352 4.2 11.7 1.0
CD1 A:TRP353 4.3 13.5 1.0
C A:TRP353 4.4 12.9 1.0
CG A:TRP353 4.5 12.4 1.0
O A:TRP354 4.6 14.0 1.0
CB A:TRP354 4.6 14.5 1.0
CA A:TRP354 4.8 13.0 1.0
O A:HOH2331 4.8 16.7 1.0
C A:ILE351 4.8 8.7 1.0
O A:TYR329 4.9 9.8 1.0
CB A:ALA352 4.9 12.1 1.0
N A:ALA352 4.9 9.8 1.0

Bromine binding site 2 out of 2 in 5fkt

Go back to Bromine Binding Sites List in 5fkt
Bromine binding site 2 out of 2 in the Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br1770

b:12.8
occ:1.00
 N B:TRP353 3.4 10.9 1.0
K B:K1771 3.5 11.8 1.0
N B:TRP354 3.8 10.9 1.0
CE2 B:TYR329 3.9 11.7 1.0
CD2 B:TYR329 3.9 10.7 1.0
CB B:TRP353 4.0 10.7 1.0
CA B:ALA352 4.1 10.7 1.0
O B:ILE351 4.1 10.1 1.0
CA B:TRP353 4.2 10.5 1.0
C B:ALA352 4.2 11.3 1.0
CD1 B:TRP353 4.3 13.4 1.0
O B:TRP354 4.5 12.8 1.0
C B:TRP353 4.5 13.0 1.0
CG B:TRP353 4.5 11.2 1.0
CB B:TRP354 4.6 14.2 1.0
CA B:TRP354 4.7 12.8 1.0
C B:ILE351 4.9 9.1 1.0
O B:HOH2316 4.9 8.0 1.0
O B:TYR329 5.0 8.4 1.0

Reference:

M.Attia, J.Stepper, G.J.Davies, H.Brumer. Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase From the Soil Saprophyte Cellvibrio Japonicus Unravels the First Step of Xyloglucan Degradation. Febs J. V. 283 1701 2016.
ISSN: ISSN 1742-464X
PubMed: 26929175
DOI: 10.1111/FEBS.13696
Page generated: Wed Jul 10 23:41:43 2024

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