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Bromine in PDB 5ku9: Crystal Structure of MCL1 with Compound 1

Enzymatic activity of Crystal Structure of MCL1 with Compound 1

All present enzymatic activity of Crystal Structure of MCL1 with Compound 1:
3.6.1.11;

Protein crystallography data

The structure of Crystal Structure of MCL1 with Compound 1, PDB code: 5ku9 was solved by A.D.Ferguson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.39 / 2.20
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 84.381, 60.647, 69.087, 90.00, 121.15, 90.00
R / Rfree (%) 18.7 / 24.1

Other elements in 5ku9:

The structure of Crystal Structure of MCL1 with Compound 1 also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms
Sodium (Na) 1 atom

Bromine Binding Sites:

The binding sites of Bromine atom in the Crystal Structure of MCL1 with Compound 1 (pdb code 5ku9). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Crystal Structure of MCL1 with Compound 1, PDB code: 5ku9:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in 5ku9

Go back to Bromine Binding Sites List in 5ku9
Bromine binding site 1 out of 2 in the Crystal Structure of MCL1 with Compound 1


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of MCL1 with Compound 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br402

b:62.2
occ:1.00
BR A:6XJ402 0.0 62.2 1.0
C30 A:6XJ402 1.9 46.4 1.0
C29 A:6XJ402 2.8 37.5 1.0
C31 A:6XJ402 2.8 39.6 1.0
O A:HOH512 3.1 50.0 1.0
O A:HOH573 3.5 55.1 1.0
C17 A:6XJ402 3.8 38.6 1.0
C28 A:6XJ402 4.1 35.5 1.0
C32 A:6XJ402 4.1 36.4 1.0
C16 A:6XJ402 4.2 37.1 1.0
NE2 A:HIS224 4.2 44.2 1.0
C20 A:6XJ402 4.2 37.0 1.0
CG2 A:THR266 4.2 24.3 1.0
C18 A:6XJ402 4.3 38.3 1.0
CE1 A:HIS224 4.3 45.8 1.0
C21 A:6XJ402 4.5 33.0 1.0
C19 A:6XJ402 4.5 35.6 1.0
NE A:ARG263 4.5 38.4 1.0
C27 A:6XJ402 4.7 34.4 1.0
CD A:ARG263 4.7 36.3 1.0
OG1 A:THR266 4.7 30.6 1.0
CB A:THR266 4.9 24.7 1.0
N3 A:6XJ402 5.0 30.8 1.0
C15 A:6XJ402 5.0 38.4 1.0

Bromine binding site 2 out of 2 in 5ku9

Go back to Bromine Binding Sites List in 5ku9
Bromine binding site 2 out of 2 in the Crystal Structure of MCL1 with Compound 1


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of MCL1 with Compound 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br401

b:93.9
occ:1.00
BR B:6XJ401 0.0 93.9 1.0
C30 B:6XJ401 1.9 89.5 1.0
C29 B:6XJ401 2.8 87.1 1.0
C31 B:6XJ401 2.8 86.4 1.0
CG2 B:THR266 3.9 55.4 1.0
CD B:ARG263 4.0 61.2 1.0
C28 B:6XJ401 4.1 84.3 1.0
C32 B:6XJ401 4.1 83.8 1.0
CB B:THR266 4.2 58.5 1.0
C16 B:6XJ401 4.2 51.2 1.0
C17 B:6XJ401 4.3 52.6 1.0
OG1 B:THR266 4.3 64.5 1.0
C7 B:6XJ401 4.3 46.1 1.0
NE B:ARG263 4.5 66.4 1.0
CG2 B:VAL253 4.6 56.9 1.0
C15 B:6XJ401 4.7 51.6 1.0
C27 B:6XJ401 4.7 81.8 1.0
C18 B:6XJ401 4.7 54.9 1.0
C6 B:6XJ401 4.8 45.9 1.0
CA B:ARG263 4.9 50.8 1.0

Reference:

J.W.Johannes, S.Bates, C.Beigie, M.A.Belmonte, J.Breen, S.Cao, P.A.Centrella, M.A.Clark, J.W.Cuozzo, C.E.Dumelin, A.D.Ferguson, S.Habeshian, D.Hargreaves, C.Joubran, S.Kazmirski, A.D.Keefe, M.L.Lamb, H.Lan, Y.Li, H.Ma, S.Mlynarski, M.J.Packer, P.B.Rawlins, D.W.Robbins, H.Shen, E.A.Sigel, H.H.Soutter, N.Su, D.M.Troast, H.Wang, K.F.Wickson, C.Wu, Y.Zhang, Q.Zhao, X.Zheng, A.W.Hird. Structure Based Design of Non-Natural Peptidic Macrocyclic Mcl-1 Inhibitors. Acs Med Chem Lett V. 8 239 2017.
ISSN: ISSN 1948-5875
PubMed: 28197319
DOI: 10.1021/ACSMEDCHEMLETT.6B00464
Page generated: Thu Jul 11 00:08:47 2024

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