Bromine in PDB 5lqo: Rna Duplex Has Central Consecutive Ga Pairs Flanked By G-C Basepairs

The structure of Rna Duplex Has Central Consecutive Ga Pairs Flanked By G-C Basepairs, PDB code: 5lqo was solved by L.Huang, D.M.J.Lilley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.11 / 1.87
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	33.469, 33.469, 113.766, 90.00, 90.00, 90.00
R / Rfree (%)	24.6 / 25.6

The binding sites of Bromine atom in the Rna Duplex Has Central Consecutive Ga Pairs Flanked By G-C Basepairs (pdb code 5lqo). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Rna Duplex Has Central Consecutive Ga Pairs Flanked By G-C Basepairs, PDB code: 5lqo:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in the Rna Duplex Has Central Consecutive Ga Pairs Flanked By G-C Basepairs


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Rna Duplex Has Central Consecutive Ga Pairs Flanked By G-C Basepairs within 5.0Å range: probe atom residue distance (Å) B Occ A:Br2 b:57.1 occ:1.00 BR A:CBV2 0.0 57.1 1.0 C5 A:CBV2 1.9 43.9 1.0 C4 A:CBV2 3.0 43.4 1.0 C6 A:CBV2 3.0 40.8 1.0 N4 A:CBV2 3.2 54.8 1.0 O1P A:CBV2 3.5 49.4 1.0 N7 A:G1 3.6 50.0 1.0 C5 A:G1 3.7 50.9 1.0 C8 A:G1 3.7 53.4 1.0 C4 A:G1 3.9 48.7 1.0 N9 A:G1 3.9 52.5 1.0 C3' A:G1 4.2 60.7 1.0 C6 A:G1 4.2 50.8 1.0 N3 A:CBV2 4.3 45.7 1.0 N1 A:CBV2 4.3 46.8 1.0 O5' A:G1 4.4 53.2 1.0 O5' A:CBV2 4.4 54.1 1.0 O A:HOH109 4.5 57.5 1.0 C2' A:G1 4.5 52.3 1.0 C5 A:C3 4.5 38.5 1.0 P A:CBV2 4.5 55.3 1.0 N4 A:C3 4.5 49.5 1.0 N3 A:G1 4.6 43.7 1.0 O6 A:G1 4.7 49.6 1.0 C1' A:G1 4.8 50.3 1.0 N1 A:G1 4.8 53.5 1.0 C4 A:C3 4.9 41.4 1.0 O3' A:G1 4.9 72.4 1.0 C2 A:CBV2 4.9 50.4 1.0 C2 A:G1 5.0 48.3 1.0

Bromine binding site 2 out of 2 in the Rna Duplex Has Central Consecutive Ga Pairs Flanked By G-C Basepairs


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Rna Duplex Has Central Consecutive Ga Pairs Flanked By G-C Basepairs within 5.0Å range: probe atom residue distance (Å) B Occ B:Br2 b:63.8 occ:1.00 BR B:CBV2 0.0 63.8 1.0 C5 B:CBV2 1.9 44.7 1.0 C6 B:CBV2 3.0 44.8 1.0 C4 B:CBV2 3.0 38.2 1.0 N4 B:CBV2 3.2 45.0 1.0 O1P B:CBV2 3.4 64.0 1.0 C8 B:G1 3.6 52.1 1.0 N7 B:G1 3.6 46.2 1.0 C5 B:G1 3.9 44.0 1.0 N9 B:G1 3.9 48.8 1.0 C3' B:G1 4.0 56.0 1.0 C4 B:G1 4.1 42.9 1.0 O5' B:G1 4.2 63.6 1.0 N1 B:CBV2 4.3 42.2 1.0 N3 B:CBV2 4.3 40.1 1.0 C2' B:G1 4.4 45.6 1.0 O5' B:CBV2 4.4 52.6 1.0 P B:CBV2 4.5 54.8 1.0 C6 B:G1 4.6 44.7 1.0 C1' B:G1 4.7 50.1 1.0 O3' B:G1 4.8 70.0 1.0 C2 B:CBV2 4.9 42.8 1.0 C5 B:C3 4.9 48.0 1.0 N3 B:G1 4.9 45.9 1.0 N4 B:C3 5.0 55.3 1.0 C4' B:G1 5.0 49.5 1.0

L.Huang, S.Ashraf, J.Wang, D.M.Lilley. Control of Box C/D Snornp Assembly By N(6)-Methylation of Adenine. Embo Rep. V. 18 1631 2017.
ISSN: ESSN 1469-3178
PubMed: 28623187
DOI: 10.15252/EMBR.201743967