Bromine in PDB 5lxy: Structure of the Minimal RBM7 - ZCCHC8 Complex

The structure of Structure of the Minimal RBM7 - ZCCHC8 Complex, PDB code: 5lxy was solved by S.Falk, K.Finogenova, C.Benda, E.Conti, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	71.79 / 2.85
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	178.771, 66.575, 111.912, 90.00, 126.57, 90.00
R / Rfree (%)	26.2 / 30

The binding sites of Bromine atom in the Structure of the Minimal RBM7 - ZCCHC8 Complex (pdb code 5lxy). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 9 binding sites of Bromine where determined in the Structure of the Minimal RBM7 - ZCCHC8 Complex, PDB code: 5lxy:
Jump to Bromine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Bromine binding site 1 out of 9 in the Structure of the Minimal RBM7 - ZCCHC8 Complex


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Structure of the Minimal RBM7 - ZCCHC8 Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Br401 b:0.5 occ:1.00 CD1 D:PHE309 3.5 56.1 1.0 CD1 C:LEU323 3.7 63.4 1.0 CB C:PRO320 3.8 64.9 1.0 CA D:PHE309 3.9 65.4 1.0 CA C:PRO320 4.0 68.5 1.0 CG D:ARG312 4.1 64.3 1.0 CE1 D:PHE309 4.2 60.3 1.0 N D:PHE309 4.2 65.4 1.0 CD D:ARG312 4.3 75.1 1.0 CB D:ARG312 4.5 57.9 1.0 CG D:PHE309 4.5 56.4 1.0 O C:PRO320 4.6 81.3 1.0 CB D:PHE309 4.7 61.9 1.0 O A:LEU69 4.7 55.6 1.0 CG C:LEU323 4.7 59.9 1.0 CB C:LEU323 4.8 63.2 1.0 C C:PRO320 4.8 78.0 1.0 C D:PHE309 4.9 65.3 1.0 CD1 A:ILE73 4.9 53.6 1.0

Bromine binding site 2 out of 9 in the Structure of the Minimal RBM7 - ZCCHC8 Complex


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Structure of the Minimal RBM7 - ZCCHC8 Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Br401 b:86.3 occ:1.00 CD1 C:PHE309 3.5 69.8 1.0 CD1 F:LEU323 3.6 79.2 1.0 CB C:ARG312 3.8 78.5 1.0 CA C:PHE309 4.0 76.6 1.0 O C:PRO308 4.0 85.2 1.0 CD1 B:ILE73 4.1 51.7 1.0 CE1 C:PHE309 4.3 71.3 1.0 CB F:PRO320 4.3 65.6 1.0 CG C:ARG312 4.4 75.9 1.0 CA F:PRO320 4.4 63.8 1.0 CG C:PHE309 4.4 68.6 1.0 CB C:PHE309 4.4 71.1 1.0 CB F:LEU323 4.5 71.4 1.0 CG F:LEU323 4.6 71.7 1.0 O C:PHE309 4.6 52.7 1.0 O F:PRO320 4.7 57.6 1.0 O B:LEU69 4.7 62.4 1.0 C C:PHE309 4.7 78.1 1.0 CD C:ARG312 4.7 74.9 1.0 C C:PRO308 4.7 78.6 1.0 N C:PHE309 4.8 76.8 1.0 NZ F:LYS324 4.9 92.7 1.0

Bromine binding site 3 out of 9 in the Structure of the Minimal RBM7 - ZCCHC8 Complex


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Structure of the Minimal RBM7 - ZCCHC8 Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Br402 b:0.3 occ:1.00 O C:LYS304 3.2 89.6 1.0 O C:GLY289 3.5 83.9 1.0 N C:ILE291 4.0 82.0 1.0 O C:LEU306 4.0 74.7 1.0 CG1 C:ILE291 4.1 87.0 1.0 CD C:PRO308 4.3 67.6 1.0 CA C:PRO307 4.3 70.1 1.0 C C:LEU306 4.4 77.1 1.0 C C:LYS304 4.4 90.3 1.0 O C:ILE291 4.5 87.6 1.0 CA C:VAL290 4.5 80.6 1.0 N C:PRO307 4.6 75.4 1.0 C C:GLY289 4.6 79.1 1.0 C C:VAL290 4.8 82.3 1.0 C C:SER305 4.8 90.4 1.0 N C:LEU306 4.9 82.4 1.0 CA C:ILE291 4.9 84.1 1.0 CD1 C:ILE291 4.9 86.2 1.0

Bromine binding site 4 out of 9 in the Structure of the Minimal RBM7 - ZCCHC8 Complex


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Structure of the Minimal RBM7 - ZCCHC8 Complex within 5.0Å range: probe atom residue distance (Å) B Occ F:Br401 b:0.2 occ:1.00 CA F:PHE309 3.4 81.2 1.0 N F:PHE309 3.7 88.4 1.0 CD1 F:PHE309 4.0 87.0 1.0 C F:PHE309 4.2 78.4 1.0 CG F:ARG312 4.3 89.3 1.0 CB F:PHE309 4.5 76.3 1.0 O F:PHE309 4.5 77.7 1.0 CG F:PHE309 4.6 81.8 1.0 CD F:ARG312 4.7 95.4 1.0 N F:ARG312 4.8 84.8 1.0 CE1 F:PHE309 4.8 91.4 1.0 CB F:ARG312 4.8 82.5 1.0 C F:PRO308 5.0 90.0 1.0

Bromine binding site 5 out of 9 in the Structure of the Minimal RBM7 - ZCCHC8 Complex


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 5 of Structure of the Minimal RBM7 - ZCCHC8 Complex within 5.0Å range: probe atom residue distance (Å) B Occ G:Br101 b:0.8 occ:1.00 CB G:HIS59 3.6 0.8 1.0 CG1 G:VAL61 3.9 0.8 1.0 CD2 G:HIS59 4.0 0.2 1.0 N G:GLU60 4.0 0.7 1.0 CG G:HIS59 4.1 0.0 1.0 CA G:HIS59 4.3 0.4 1.0 N G:VAL61 4.3 0.6 1.0 CG2 G:VAL61 4.4 0.3 1.0 C G:HIS59 4.6 1.0 1.0 CB G:VAL61 4.7 1.0 1.0 CA G:GLU60 4.9 0.6 1.0 CB G:GLU60 4.9 0.4 1.0

Bromine binding site 6 out of 9 in the Structure of the Minimal RBM7 - ZCCHC8 Complex


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 6 of Structure of the Minimal RBM7 - ZCCHC8 Complex within 5.0Å range: probe atom residue distance (Å) B Occ H:Br401 b:0.8 occ:1.00 CD1 H:PHE309 3.9 81.2 1.0 CA H:PHE309 4.2 87.1 1.0 CB H:ARG312 4.3 0.8 1.0 CD1 G:ILE73 4.3 90.8 1.0 CE1 H:PHE309 4.4 85.9 1.0 N H:PHE309 4.4 88.1 1.0 CG H:PHE309 4.8 72.3 1.0 CG H:ARG312 4.9 0.9 1.0 O G:LEU69 4.9 92.7 1.0

Bromine binding site 7 out of 9 in the Structure of the Minimal RBM7 - ZCCHC8 Complex


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 7 of Structure of the Minimal RBM7 - ZCCHC8 Complex within 5.0Å range: probe atom residue distance (Å) B Occ J:Br401 b:0.1 occ:1.00 CG J:ARG312 3.2 85.2 1.0 CD1 J:PHE309 3.6 0.2 1.0 CA J:PHE309 3.6 98.8 1.0 CB D:PRO320 3.7 78.8 1.0 CB J:ARG312 3.9 84.0 1.0 N J:PHE309 4.1 97.7 1.0 CA D:PRO320 4.1 82.6 1.0 CB J:PHE309 4.4 0.8 1.0 CE1 J:PHE309 4.5 0.9 1.0 CG J:PHE309 4.5 0.9 1.0 CD J:ARG312 4.5 80.2 1.0 CD1 I:ILE73 4.5 73.4 1.0 C J:PHE309 4.6 94.8 1.0 O I:LEU69 4.7 94.3 1.0 O J:PHE309 4.8 92.8 1.0 N J:ARG312 4.8 82.8 1.0 CD1 I:LEU69 4.9 84.9 1.0 O D:PRO320 4.9 87.1 1.0 CB D:LEU323 5.0 90.4 1.0

Bromine binding site 8 out of 9 in the Structure of the Minimal RBM7 - ZCCHC8 Complex


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 8 of Structure of the Minimal RBM7 - ZCCHC8 Complex within 5.0Å range: probe atom residue distance (Å) B Occ L:Br401 b:0.2 occ:1.00 CA L:PHE309 3.9 0.3 0.8 CB H:PRO320 3.9 83.4 1.0 CA H:PRO320 4.0 87.1 1.0 CB L:ARG312 4.1 88.0 1.0 N L:PHE309 4.3 0.7 1.0 CD1 H:LEU323 4.4 0.2 1.0 CB L:PHE309 4.6 85.7 1.0 O H:PRO320 4.7 96.0 1.0 CB H:LEU323 4.7 0.3 1.0 CD1 K:ILE73 4.8 0.3 1.0 C L:PHE309 4.8 0.9 1.0 O K:LEU69 4.9 92.7 1.0 C H:PRO320 4.9 93.0 1.0

Bromine binding site 9 out of 9 in the Structure of the Minimal RBM7 - ZCCHC8 Complex


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 9 of Structure of the Minimal RBM7 - ZCCHC8 Complex within 5.0Å range: probe atom residue distance (Å) B Occ N:Br401 b:0.5 occ:1.00 O N:PRO308 3.8 0.6 1.0 CB J:PRO320 3.9 0.4 1.0 CA J:PRO320 4.1 0.5 1.0 CD1 N:PHE309 4.3 0.1 1.0 CB N:ARG312 4.3 93.2 1.0 CD1 M:ILE73 4.6 0.8 1.0 CB J:LEU323 4.6 0.3 1.0 CA N:PHE309 4.6 0.3 1.0 CE1 N:PHE309 4.7 0.2 1.0 O J:PRO320 4.7 0.3 1.0 O M:LEU69 4.7 0.4 1.0 C N:PRO308 4.7 0.4 1.0 C J:PRO320 4.9 0.7 1.0

S.Falk, K.Finogenova, M.Melko, C.Benda, S.Lykke-Andersen, T.H.Jensen, E.Conti. Structure of the RBM7-ZCCHC8 Core of the Next Complex Reveals Connections to Splicing Factors. Nat Commun V. 7 13573 2016.
ISSN: ESSN 2041-1723
PubMed: 27905398
DOI: 10.1038/NCOMMS13573