Bromine in PDB 5mpw: Crystal Structure of Arabidopsis Thaliana Rna Editing Factor MORF1

The structure of Crystal Structure of Arabidopsis Thaliana Rna Editing Factor MORF1, PDB code: 5mpw was solved by S.Haag, M.Schindler, L.Berndt, A.Brennicke, M.Takenaka, G.Weber, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.98 / 1.50
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	39.280, 44.940, 68.200, 98.10, 91.98, 111.96
R / Rfree (%)	15.7 / 19.2

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 26;

Binding sites:

The binding sites of Bromine atom in the Crystal Structure of Arabidopsis Thaliana Rna Editing Factor MORF1 (pdb code 5mpw). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 26 binding sites of Bromine where determined in the Crystal Structure of Arabidopsis Thaliana Rna Editing Factor MORF1, PDB code: 5mpw:
Jump to Bromine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Bromine binding site 1 out of 26 in the Crystal Structure of Arabidopsis Thaliana Rna Editing Factor MORF1


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of Arabidopsis Thaliana Rna Editing Factor MORF1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br201 b:17.9 occ:0.64 O A:HOH421 3.0 43.5 1.0 NH1 A:ARG189 3.3 20.3 1.0 N A:TYR176 3.4 10.2 1.0 NH2 A:ARG189 3.7 13.2 1.0 CB A:TYR176 3.8 9.2 1.0 CD2 A:TYR176 3.8 10.4 1.0 O A:HOH389 3.9 37.1 1.0 CZ A:ARG189 4.0 20.4 1.0 CA A:TYR176 4.1 8.9 1.0 O A:TYR176 4.1 13.4 1.0 CA A:GLU175 4.3 12.2 1.0 CG A:TYR176 4.3 10.1 1.0 C A:GLU175 4.4 11.9 1.0 C A:TYR176 4.5 10.8 1.0 CD1 A:TYR132 4.5 7.5 1.0 CB A:GLU175 4.8 22.1 1.0 CE1 A:TYR132 4.8 6.6 1.0 CE2 A:TYR176 4.9 11.5 1.0 O A:LYS174 5.0 18.1 1.0

Bromine binding site 2 out of 26 in the Crystal Structure of Arabidopsis Thaliana Rna Editing Factor MORF1


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of Arabidopsis Thaliana Rna Editing Factor MORF1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br202 b:17.9 occ:0.60 O B:HOH337 3.0 21.2 1.0 O A:HOH318 3.0 19.0 1.0 O A:HOH364 3.1 22.8 1.0 O B:HOH367 3.1 16.9 1.0 CE2 B:PHE162 4.1 12.3 1.0 CD2 B:PHE162 4.1 14.3 1.0 CE2 A:PHE162 4.1 23.0 1.0 CB A:TYR139 4.1 12.8 1.0 CG2 B:THR93 4.1 10.4 1.0 CG2 A:THR93 4.2 9.8 1.0 CD2 A:PHE162 4.3 30.2 1.0 O B:HOH340 4.4 25.4 1.0 CB B:TYR139 4.4 11.4 1.0 O B:HOH319 4.5 26.2 1.0 OG1 B:THR93 4.5 9.7 1.0 CB B:THR93 4.5 9.0 1.0 CB A:THR93 4.6 9.2 1.0 OG1 A:THR93 4.6 10.8 1.0 CA A:TYR139 4.9 14.1 1.0

Bromine binding site 3 out of 26 in the Crystal Structure of Arabidopsis Thaliana Rna Editing Factor MORF1


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Crystal Structure of Arabidopsis Thaliana Rna Editing Factor MORF1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br203 b:47.7 occ:0.77 N A:ALA77 3.5 17.8 1.0 N D:GLY159 3.7 15.1 1.0 CA A:GLY76 3.8 16.5 1.0 O D:HOH359 3.8 18.8 1.0 O D:HOH367 3.8 44.4 1.0 CA D:PRO158 4.1 19.2 1.0 C A:GLY76 4.2 12.6 1.0 O D:HOH395 4.2 40.7 1.0 O D:HOH406 4.3 54.1 1.0 CB A:ALA77 4.3 27.1 1.0 C D:PRO158 4.5 16.1 1.0 CB D:PRO158 4.5 21.4 1.0 CA A:ALA77 4.5 17.2 1.0 CA D:GLY159 4.6 17.3 1.0 CE A:MET78 4.9 30.2 0.5

Bromine binding site 4 out of 26 in the Crystal Structure of Arabidopsis Thaliana Rna Editing Factor MORF1


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Crystal Structure of Arabidopsis Thaliana Rna Editing Factor MORF1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br204 b:18.1 occ:0.31 OE2 A:GLU126 3.1 54.6 1.0 CD A:GLU126 3.2 32.7 1.0 OE1 A:GLU126 3.5 25.3 1.0 O A:HOH393 3.5 27.1 1.0 CG2 A:ILE122 3.9 20.5 1.0 CG A:GLU126 4.0 19.8 1.0 CB A:GLU126 4.2 15.1 1.0 CB A:ILE122 4.3 15.5 1.0 O A:HOH357 4.7 23.5 1.0 CD1 A:ILE122 4.9 17.4 1.0

Bromine binding site 5 out of 26 in the Crystal Structure of Arabidopsis Thaliana Rna Editing Factor MORF1


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 5 of Crystal Structure of Arabidopsis Thaliana Rna Editing Factor MORF1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br205 b:22.8 occ:0.38 ND2 A:ASN88 3.5 20.4 1.0 CG2 A:ILE145 3.9 12.4 1.0 CB A:ASN88 4.1 21.4 1.0 CG2 A:THR147 4.3 21.4 1.0 CG A:ASN88 4.3 23.7 1.0 C A:MET146 4.6 14.2 1.0 N A:THR147 4.7 14.6 1.0 O A:MET146 4.9 12.9 1.0 N A:MET146 4.9 8.0 1.0 CA A:MET146 4.9 10.3 1.0

Bromine binding site 6 out of 26 in the Crystal Structure of Arabidopsis Thaliana Rna Editing Factor MORF1


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 6 of Crystal Structure of Arabidopsis Thaliana Rna Editing Factor MORF1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br206 b:26.7 occ:0.39 OH A:TYR87 2.9 15.9 1.0 O D:HOH374 2.9 27.5 1.0 OH B:TYR87 3.0 21.6 1.0 CZ C:PHE82 3.7 15.3 1.0 CZ D:PHE82 4.0 21.9 1.0 CZ A:TYR87 4.0 13.5 1.0 CE2 C:PHE82 4.0 16.7 1.0 CZ B:TYR87 4.1 20.9 1.0 SG D:CYS85 4.1 27.0 1.0 CE2 A:TYR87 4.2 14.9 1.0 SG A:CYS85 4.2 20.1 1.0 CA C:GLY84 4.4 17.9 1.0 CE2 B:TYR87 4.4 21.2 1.0 CE2 D:PHE82 4.5 19.3 1.0 N D:CYS85 4.5 27.9 1.0 CB A:CYS85 4.6 19.1 1.0 O B:HOH343 4.7 37.6 1.0 O A:HOH392 4.7 24.4 1.0 CA D:GLY84 4.7 30.1 1.0 CE1 C:PHE82 4.9 16.2 1.0 O A:HOH367 5.0 40.4 1.0

Bromine binding site 7 out of 26 in the Crystal Structure of Arabidopsis Thaliana Rna Editing Factor MORF1


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 7 of Crystal Structure of Arabidopsis Thaliana Rna Editing Factor MORF1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br207 b:35.0 occ:0.39 CE A:LYS180 2.9 48.5 1.0 O A:HOH396 3.5 42.5 1.0 O A:HOH371 3.6 35.4 1.0 CG2 A:THR187 3.6 16.0 1.0 CD A:ARG189 3.9 22.0 1.0 CG A:ARG189 3.9 24.1 1.0 CD A:LYS180 3.9 32.4 1.0 CB A:THR187 4.0 14.4 1.0 NZ A:LYS180 4.0 50.8 1.0 CB A:LYS180 4.2 12.5 1.0 OG1 A:THR187 4.7 20.2 1.0 CG A:LYS180 4.7 18.4 1.0

Bromine binding site 8 out of 26 in the Crystal Structure of Arabidopsis Thaliana Rna Editing Factor MORF1


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 8 of Crystal Structure of Arabidopsis Thaliana Rna Editing Factor MORF1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br208 b:43.7 occ:0.45 N A:GLY159 3.6 22.0 1.0 CA A:PRO158 3.8 19.7 1.0 CA D:GLY76 3.8 24.1 1.0 O A:HOH387 3.8 28.6 1.0 N D:ALA77 4.0 20.8 1.0 C A:PRO158 4.2 21.6 1.0 CB A:PRO158 4.3 30.4 1.0 C D:GLY76 4.4 16.3 1.0 O A:HOH388 4.5 35.6 1.0 CA A:GLY159 4.6 21.6 1.0 NZ A:LYS98 4.8 70.5 1.0 N A:PRO158 5.0 21.3 1.0

Bromine binding site 9 out of 26 in the Crystal Structure of Arabidopsis Thaliana Rna Editing Factor MORF1


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 9 of Crystal Structure of Arabidopsis Thaliana Rna Editing Factor MORF1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Br209 b:93.5 occ:0.72 N A:LYS103 3.5 25.2 1.0 CA A:PRO102 3.7 47.8 1.0 CB A:PRO102 4.0 51.0 1.0 O A:PHE96 4.1 47.4 1.0 C A:PRO102 4.1 42.0 1.0 CB A:PHE96 4.2 25.3 1.0 O A:LYS103 4.3 26.9 1.0 CA A:LYS103 4.5 23.3 1.0 CB A:LYS103 4.6 20.7 1.0 C A:LYS103 4.9 26.9 1.0 C A:PHE96 4.9 42.5 1.0 N A:PRO102 5.0 48.3 1.0

Bromine binding site 10 out of 26 in the Crystal Structure of Arabidopsis Thaliana Rna Editing Factor MORF1


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 10 of Crystal Structure of Arabidopsis Thaliana Rna Editing Factor MORF1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Br201 b:15.0 occ:0.74 O B:HOH330 3.3 21.9 1.0 NH1 B:ARG189 3.4 17.1 1.0 O B:HOH423 3.4 26.5 1.0 N B:TYR176 3.4 8.8 1.0 O B:HOH421 3.4 28.6 1.0 NH2 B:ARG189 3.6 12.8 1.0 CD2 B:TYR176 3.9 10.2 1.0 CZ B:ARG189 3.9 14.1 1.0 CB B:TYR176 4.0 10.5 1.0 CA B:GLU175 4.1 10.1 1.0 CA B:TYR176 4.1 7.4 1.0 O B:TYR176 4.1 10.9 1.0 C B:GLU175 4.3 9.7 1.0 CD1 B:TYR132 4.3 8.1 1.0 CG B:TYR176 4.4 8.1 1.0 C B:TYR176 4.5 8.7 1.0 CB B:GLU175 4.5 12.2 1.0 CG B:GLU175 4.5 20.8 1.0 O B:LYS174 4.7 12.9 1.0 O B:HOH381 4.7 42.7 1.0 O B:TYR132 4.8 9.6 1.0 CE1 B:TYR132 4.8 9.0 1.0

S.Haag, M.Schindler, L.Berndt, A.Brennicke, M.Takenaka, G.Weber. Crystal Structures of the Arabidopsis Thaliana Organellar Rna Editing Factors MORF1 and MORF9. Nucleic Acids Res. V. 45 4915 2017.
ISSN: ESSN 1362-4962
PubMed: 28201607
DOI: 10.1093/NAR/GKX099