Atomistry » Bromine » PDB 5mrm-5o0j » 5neo
Atomistry »
  Bromine »
    PDB 5mrm-5o0j »
      5neo »

Bromine in PDB 5neo: The Structure of the G. Violaceus Guanidine II Riboswitch P1 Stem-Loop

Protein crystallography data

The structure of The Structure of the G. Violaceus Guanidine II Riboswitch P1 Stem-Loop, PDB code: 5neo was solved by L.Huang, J.Wang, D.M.J.Lilley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.65 / 1.69
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 55.302, 55.302, 130.164, 90.00, 90.00, 120.00
R / Rfree (%) 21.6 / 23

Other elements in 5neo:

The structure of The Structure of the G. Violaceus Guanidine II Riboswitch P1 Stem-Loop also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Bromine Binding Sites:

The binding sites of Bromine atom in the The Structure of the G. Violaceus Guanidine II Riboswitch P1 Stem-Loop (pdb code 5neo). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the The Structure of the G. Violaceus Guanidine II Riboswitch P1 Stem-Loop, PDB code: 5neo:

Bromine binding site 1 out of 1 in 5neo

Go back to Bromine Binding Sites List in 5neo
Bromine binding site 1 out of 1 in the The Structure of the G. Violaceus Guanidine II Riboswitch P1 Stem-Loop


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of The Structure of the G. Violaceus Guanidine II Riboswitch P1 Stem-Loop within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br17

b:38.2
occ:1.00
BR A:CBV17 0.0 38.2 1.0
C5 A:CBV17 1.9 32.1 1.0
HN42 A:CBV17 2.8 50.7 1.0
C6 A:CBV17 2.9 31.0 1.0
C4 A:CBV17 2.9 30.2 1.0
H6 A:CBV17 3.0 37.2 1.0
N4 A:CBV17 3.2 42.2 1.0
H3' A:A16 3.5 36.1 1.0
N7 A:A16 3.6 34.8 1.0
O A:HOH205 3.7 37.2 1.0
C8 A:A16 3.7 33.6 1.0
O3P A:CBV17 3.7 30.8 1.0
C5 A:A16 3.9 33.6 1.0
H8 A:A16 4.0 40.4 1.0
H2' A:A16 4.0 36.2 1.0
HN41 A:CBV17 4.1 50.7 1.0
N9 A:A16 4.1 29.2 1.0
O A:HOH204 4.2 41.7 1.0
C4 A:A16 4.2 34.7 1.0
NA A:NA102 4.3 64.0 1.0
N1 A:CBV17 4.3 32.4 1.0
N3 A:CBV17 4.3 32.8 1.0
C3' A:A16 4.4 30.1 1.0
O5' A:CBV17 4.5 28.6 1.0
C6 A:A16 4.6 38.2 1.0
H5 A:C18 4.6 43.6 1.0
C2' A:A16 4.6 30.1 1.0
H41 A:C18 4.6 40.9 1.0
P A:CBV17 4.7 30.8 1.0
O5' A:A16 4.8 31.2 1.0
C2 A:CBV17 4.8 32.7 1.0
H62 A:A16 4.8 39.0 1.0
C1' A:A16 4.9 24.2 1.0
OP2 A:A16 5.0 33.2 1.0
N6 A:A16 5.0 32.5 1.0

Reference:

L.Huang, J.Wang, D.M.J.Lilley. The Structure of the Guanidine-II Riboswitch. Cell Chem Biol V. 24 695 2017.
ISSN: ESSN 2451-9456
PubMed: 28529131
DOI: 10.1016/J.CHEMBIOL.2017.05.014
Page generated: Sat Dec 12 02:28:27 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy